View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_low_40 (Length: 211)
Name: NF9027_low_40
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_40 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 35786868 - 35786792
Alignment:
| Q |
135 |
gtcctttacttcctcgtccttctggtttctcagtttacaataattttgtcccatttggtgtttacaataattttcat |
211 |
Q |
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| T |
35786868 |
gtcctttacttcctcgtccttctggtttctcagtttacaataattttgtcccatttggtgtttacaataattttcat |
35786792 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 45
Target Start/End: Complemental strand, 35786989 - 35786958
Alignment:
| Q |
14 |
attattctctatggttctagggctcagcttaa |
45 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35786989 |
attattctctatggttctagggctcagcttaa |
35786958 |
T |
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