View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9028_high_2 (Length: 514)
Name: NF9028_high_2
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 498
Target Start/End: Complemental strand, 14661891 - 14661393
Alignment:
| Q |
13 |
ataatactaatcactcacgattttgaaaggacgagcaaaacagatacaaccaagaaacgcctgccctatatatgcagtaaaactgaaaacccataggaaa |
112 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14661891 |
ataatactaatcattcacgatcttgaaaggacgagcaaaacagatacaaccaagaaacgcctgccctatatatgcagtaaaactgaaaacccgaaggaaa |
14661792 |
T |
|
| Q |
113 |
aaagaccaaaaactcccaacgagtaaccagtagacacgcctcaaacaagactaaatacacctcaaacaagacaaatacatcatgttgctgttttttgtgc |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14661791 |
aaagaccaaaaactttcaacgagtaaccagcagacacgcctcaaacaagactaaatacgcctcaaacaagactaatacatcatgttgctgttttttgtgc |
14661692 |
T |
|
| Q |
213 |
aaatacaaagactataacatcaacattaacaacaaaaacaacccttttgttgatgatttaatagaccctctttgcaagttgaaccgaagagaaacctgaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14661691 |
aaatacaaagactataacatcaacatcaacaacaaaaacaacccttttgttgatgatttaatagaccctctttgcaagttgaacccaagagaaacctgaa |
14661592 |
T |
|
| Q |
313 |
tttgtcaaatccatgccagctctaaatcccaacgcagtaaacagaagattcaacaatgtttctgtaacacggttgagaaaacttgaagctcctttgacac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
14661591 |
tttgtcaaatccatgccagctctaaatctcaacgcagtaaacagaacattcaacaatgtttctggaacacggttgagaaaatttgaagctcctttgacac |
14661492 |
T |
|
| Q |
413 |
ctggtagacagaccgcttta------cagttcttctgttgtttgaagaaacttt-------aaagttttctttcaaaatggtattgatgctgaaaaatg |
498 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14661491 |
ctggtagacagacccctttacagcttcagttcttctgttgtttgaagaaagtttcccataaaaagttttctttcaaaatggtattgatactgaaaaatg |
14661393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 186 - 498
Target Start/End: Complemental strand, 14669683 - 14669358
Alignment:
| Q |
186 |
aatacatcatgttgctgttttttgtgcaaatacaaagactataacatcaacattaacaacaaaaacaacccttttgttgatgatttaatagaccctcttt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
14669683 |
aatacatcatgttgctgttttttgtgcaaatacaaagactataacatcaacatcaacaacaaaaacaacccttttgttgatgatttcattgaccctcttt |
14669584 |
T |
|
| Q |
286 |
gcaagttgaaccgaagagaaacctgaatttgtcaaatccatgccagctctaaatcccaacgcagtaaacagaagattcaacaatgtttctgtaacacggt |
385 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
14669583 |
gcaagttgagcccaagagaaacctgaatttgtcaaatccatgccagttctaaatcccaacgcagaaaacagaagatttaacaatgtttctgcaacacggt |
14669484 |
T |
|
| Q |
386 |
tgagaaaacttgaagctcctttgacacctggtagacagaccgcttta------cagttcttctgttgtttgaagaaacttt-------aaagttttcttt |
472 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
14669483 |
tgagaaaacttgaagctcctttgacaccttgtagacagacccctttacaacttcagttcttctaatgtttgaagaaactttcccataaaaagttttcttt |
14669384 |
T |
|
| Q |
473 |
caaaatggtattgatgctgaaaaatg |
498 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
14669383 |
cgaaatggtattgatgctgaaaaatg |
14669358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 186 - 498
Target Start/End: Original strand, 14671552 - 14671871
Alignment:
| Q |
186 |
aatacatcatgttgctgttttttgtgcaaatacaaagactataacatcaacattaacaacaaaaacaacccttttgttgatgatttaatagaccctcttt |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
14671552 |
aatacatcatgttgctgttttttgtgcaaatacaaagactataacatcaaca------acaaaaacaacccttttgttgatgatttcattgaccctcttt |
14671645 |
T |
|
| Q |
286 |
gcaagttgaaccgaagagaaacctgaatttgtcaaatccatgccagctctaaatcccaacgcagtaaacagaagattcaacaatgtttctgtaacacggt |
385 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
14671646 |
gcaagttgaacccaagagaaacctgaatttgtcaaatccatgccagttctaaatcccaacgcagaaaacagaagatttaacaatgtttctgcaacacggt |
14671745 |
T |
|
| Q |
386 |
tgagaaaacttgaagctcctttgacacctggtagacagaccgcttta------cagttcttctgttgtttgaagaaacttt-------aaagttttcttt |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
14671746 |
tgagaaaacttgaagctcctttgacacctggtagacagacccctttacagcttcagttcttctgttgtttgaaaaaactttcccataaaaagttttcttt |
14671845 |
T |
|
| Q |
473 |
caaaatggtattgatgctgaaaaatg |
498 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
14671846 |
cgaaatggtattgatgctgaaaaatg |
14671871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 186 - 495
Target Start/End: Original strand, 14643659 - 14643980
Alignment:
| Q |
186 |
aatacatcatgttgctgttttttgtgcaaatacaaagactataacatcaacattaacaacaaaaacaacccttttgttgatgatttaatagaccctcttt |
285 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
14643659 |
aataaatcatgtttctgttttttgtgcaaatataaagactataacatcaacatcaacaacaaaaacaacccttttgttgatgatttcattgaccctcttt |
14643758 |
T |
|
| Q |
286 |
gcaagttgaaccgaagagaaacctgaatttgtcaaatccatgccagctctaaatcccaacgcagtaaacagaagattcaacaatgtttctgtaacacggt |
385 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
14643759 |
gcaagttgaacctaagagaaacctgaattcatcaaatccatgccagttctaaatcccaacgca-taaacagaagattcaaaaatgtttctgcaacacggt |
14643857 |
T |
|
| Q |
386 |
tgagaaaacttgaagctcctttgacacctggtagacagaccgcttta------cagttcttctgttgtttgaagaaacttt-------aaagttttcttt |
472 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14643858 |
tgagaaaacttcaagctcctttgacacctggtggacagaccccattacagcttcagttcttctgttgtttgaagaaactttcccataaaaagttttcttt |
14643957 |
T |
|
| Q |
473 |
caaaatggtattgatgctgaaaa |
495 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
14643958 |
cgaaatggtattgatgctgaaaa |
14643980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 186 - 425
Target Start/End: Original strand, 14687986 - 14688219
Alignment:
| Q |
186 |
aatacatcatgttgctgttttttgtgcaaatacaaagactataacatcaacattaacaacaaaaacaacccttttgttgatgatttaatagaccctcttt |
285 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
14687986 |
aatacatcatgttgctttttttttttcaaatacaaagactataacatcaaca------acaaaaacaacccttttgttgatgatttcattgaccctcttt |
14688079 |
T |
|
| Q |
286 |
gcaagttgaaccgaagagaaacctgaatttgtcaaatccatgccagctctaaatcccaacgcagtaaacagaagattcaacaatgtttctgtaacacggt |
385 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
14688080 |
gcaagttgaacctaaaagaaacctgagtttgtcaaaatcaagccagttctaaatcccaacgcagaaaatagaagattcaacaatgtttctgcaacacaac |
14688179 |
T |
|
| Q |
386 |
tgagaaaacttgaagctcctttgacacctggtagacagac |
425 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
14688180 |
tgagaaaactagaagctccttcgacaaatggtagacagac |
14688219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 421
Target Start/End: Original strand, 8275605 - 8275788
Alignment:
| Q |
240 |
aacaacaaaaacaacccttttgttgatgatttaatagaccctctttgcaagttgaaccgaagagaaac--ctgaatttgtcaaatccatgccagctctaa |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || || ||||||||| |||||| || |||||| |||| ||||||||||| | |||| | || |
|
|
| T |
8275605 |
aacaacaaaaacaacccttttgttgatgatttcattgatccactttgcaagctgaacctaaaagaaacctctgagtttgtcaaatctttaccagtttcaa |
8275704 |
T |
|
| Q |
338 |
atcccaacgcagtaaacagaagattcaacaatgtttctgtaacacggttgagaaaacttgaagctcctttgacacctggtagac |
421 |
Q |
| |
|
| |||| |||| |||||||||| ||| ||||| ||||||||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
8275705 |
acaccaatgcagaaaacagaagactcagcaatgattctgtaacacaaatgagaaaactagaagctccttctacacctggtagac |
8275788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 497
Target Start/End: Original strand, 14688229 - 14688342
Alignment:
| Q |
397 |
gaagctcctttgacacctggtagacagaccgcttta------cagttcttctgttgtttgaagaaacttt-------aaagttttctttcaaaatggtat |
483 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| | ||||||||||| |||||| || |
|
|
| T |
14688229 |
gaagctccttcgacacctggtagacagacccctttacagcttcagttcttctgttgttttaagaaactttcccataaagagttttctttcgaaatgggat |
14688328 |
T |
|
| Q |
484 |
tgatgctgaaaaat |
497 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
14688329 |
tgatgctaaaaaat |
14688342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University