View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9028_high_4 (Length: 355)
Name: NF9028_high_4
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_high_4 |
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| [»] scaffold0590 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 31 - 336
Target Start/End: Complemental strand, 31230240 - 31229937
Alignment:
| Q |
31 |
caattaactgagatttccttatatcagttttagtatcattacaaagtatgcccattttgaatctatcctttatgaaaatattggttaaggtttggagaat |
130 |
Q |
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| T |
31230240 |
caattaattgagatttccttatatcaattttagtatcattacaaagtatgcccattttcaatctatcctttatgaaaatattggttaaggtttggagaat |
31230141 |
T |
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| Q |
131 |
agttgttaaagctcaaaaaaggtttctttagggtagttcaagaaatatgagtaaaattgtttaggtcaagtgatcagatgtttgtaggtcaaaatcgatg |
230 |
Q |
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| T |
31230140 |
agttgttaaagctcaaaaaaggtttctttagggtagttcaagaaatatgagtaaaattgtttaggtcaagtgatcagatgtttgtaggtcaaaatcgatg |
31230041 |
T |
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| Q |
231 |
gatgggccgggggttagagatctcagattgcttagtttaagcttacttgttaggtgtagatgcggcgcttgttggtggacatgaattctatctagaaaga |
330 |
Q |
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| T |
31230040 |
gatgggccgggggttagagatctcagattgcttagtttaagcttacttgttaggtgtagat--ggcgcttgttggtggacatgaattctatctagaaaga |
31229943 |
T |
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| Q |
331 |
ggtctt |
336 |
Q |
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|||||| |
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| T |
31229942 |
ggtctt |
31229937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 42624166 - 42624230
Alignment:
| Q |
10 |
gtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcattacaa |
74 |
Q |
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| T |
42624166 |
gtgttcacagtgaaacattatcaattaattgagatttccttatatcaattttagtaccattacaa |
42624230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 34441608 - 34441548
Alignment:
| Q |
10 |
gtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcatt |
70 |
Q |
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| T |
34441608 |
gtgttcacagtgaaacattatcaattaattgagatttccttatatcaattttagtaccatt |
34441548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 8332663 - 8332724
Alignment:
| Q |
13 |
ttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcattacaa |
74 |
Q |
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| T |
8332663 |
ttcacagcaaaacattatcaattaattgagatttccttatatcaattttagtaccattacaa |
8332724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 10548347 - 10548410
Alignment:
| Q |
10 |
gtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcattaca |
73 |
Q |
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| T |
10548347 |
gtgttcacagtgaaacattatcaattaattgagatttccttatatccattttagtaccattaca |
10548410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 30803665 - 30803601
Alignment:
| Q |
10 |
gtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcattacaa |
74 |
Q |
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||||||| |||||||||||||||||||| | ||||| |||||||||| |||||||| | |||||| |
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| T |
30803665 |
gtgttcaaagtgaaacattatcaattaatttagattcccttatatcaattttagtaccgttacaa |
30803601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 4922 - 4868
Alignment:
| Q |
11 |
tgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagta |
65 |
Q |
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| T |
4922 |
tgttcacagggaaacattatcaattaattgagatttccttatatcaattttagta |
4868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 7599 - 7545
Alignment:
| Q |
11 |
tgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagta |
65 |
Q |
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|||||| |||||||||||||||||||| |||||||||||| ||||| |||||||| |
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| T |
7599 |
tgttcatagtgaaacattatcaattaattgagatttccttttatcaattttagta |
7545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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