View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9028_low_1 (Length: 971)
Name: NF9028_low_1
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_1 |
 | |
|
| [»] scaffold0003 (3 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 713; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 13 - 824
Target Start/End: Original strand, 42311958 - 42312769
Alignment:
| Q |
13 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
42311958 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcgaagaacacgacgtcataaccactattaagaagat |
42312057 |
T |
|
| Q |
113 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312058 |
gagggtgtacaaagtaactgtagggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
42312157 |
T |
|
| Q |
213 |
atataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattgatgtatcaaatgagatgatccaattgtattacttgcaatagcaac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42312158 |
atataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattgatgtatcaaatgagatgatccacttgtattacttgcaatagcaac |
42312257 |
T |
|
| Q |
313 |
agtgaagcacaataacaaacatgtataatttcactcatagtatttcatccacatcatagaaagtcaccttttatatttttgttgttttcccgcttcaatg |
412 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
42312258 |
agtgaaacacaataacaaacatgtataatttcgctcatagtatttcatctacatcagagaaagtcaccttttatatttttgttcttttcctgcttcaatg |
42312357 |
T |
|
| Q |
413 |
aatgaacacccccagtttgtccagcaagagtgtcattgataatgatctgtggagctctgtttgatgaatcactcaagcttggatggatttcatttaaagt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312358 |
aatgaacacccccagtttgtccagcaagagtgtcattgataatgctttgtggtgctctgtttgatgaatcactcaagcttggatggatttcatttaaagt |
42312457 |
T |
|
| Q |
513 |
cttccaaaaataaaaatactacttcagaaagctcattaatagaactaatatgattcttcattttctgctagaacaaaatctgattggagagaaaaggaaa |
612 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312458 |
cttccaaaaataaaaatactactttagaaagctcattaatagaactaatatgattcttcattttctgctagaacaaaatctgattggagagaaaaggaag |
42312557 |
T |
|
| Q |
613 |
aaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtagg-taattcctgcttcagagttccatttctctttttaaatgca |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
42312558 |
caatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatgtgtaggctaatttctgcttcatagttccatttctc-ttttaaatgca |
42312656 |
T |
|
| Q |
712 |
aaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaag |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312657 |
aaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaag |
42312756 |
T |
|
| Q |
812 |
atgcagatttaac |
824 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42312757 |
atgcagatttaac |
42312769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 893 - 955
Target Start/End: Original strand, 42312838 - 42312900
Alignment:
| Q |
893 |
gtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattct |
955 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312838 |
gtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattct |
42312900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 8333983 - 8333931
Alignment:
| Q |
265 |
ttgatgtatcaaatgagatgatccaattgtattacttgcaatagcaacagtga |
317 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8333983 |
ttgatgtatcgaatgagatgatccagccgtattacttgcaatagcaacagtga |
8333931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 397 - 520
Target Start/End: Original strand, 15580687 - 15580810
Alignment:
| Q |
397 |
ttttcccgcttcaatgaatgaacacccccagtttgtccagcaagagtgtcattgataatgatctgtggagctctgtttgatgaatcactcaagcttggat |
496 |
Q |
| |
|
|||||| |||| |||||| ||||| |||||||| || ||||||||||||||| ||||| ||||| || | ||||||||| | |||| |||||| | |
|
|
| T |
15580687 |
ttttcctgctttaatgaaagaacaaccccagttaatctagcaagagtgtcattactaatgcattgtggtgcaccatttgatgaaccgctcaggcttgggt |
15580786 |
T |
|
| Q |
497 |
ggatttcatttaaagtcttccaaa |
520 |
Q |
| |
|
|||| || |||||||||||||||| |
|
|
| T |
15580787 |
ggatgtcgtttaaagtcttccaaa |
15580810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 12049588 - 12049540
Alignment:
| Q |
265 |
ttgatgtatcaaatgagatgatccaattgtattacttgcaatagcaaca |
313 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
12049588 |
ttgatgtatcaaatgagatgatccagctgtgttacttgccatagcaaca |
12049540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 596
Target Start/End: Complemental strand, 47247455 - 47246871
Alignment:
| Q |
13 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
47247455 |
tggtggtggtgaaacttctcttagtgatttgtttgatttggattttagtggtggtagagatagtcggagaacacgacgtcatagccgctgttaaaaagat |
47247356 |
T |
|
| Q |
113 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
47247355 |
gagggtgtacgaagtaactgtcgggatgaaagagagacaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggttgaaagacaaat |
47247256 |
T |
|
| Q |
213 |
atataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattgatgtatcaaatgagatgatccaattgtattacttgcaatagcaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47247255 |
atataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattaatgtatcaaatgagatgatccacttgtattacttgcaatagcaac |
47247156 |
T |
|
| Q |
313 |
agtgaagcacaataacaaacatgtataatttcactcatagtatttcatccacatcatagaaagtcaccttttatatttttgttgttttcccgcttcaatg |
412 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47247155 |
agtgaaacacaataacaaacatgtataatttcgcttatagtatttcatctacatcatagaaagtcaccttttatatttttgttgttttcctgcttcaatg |
47247056 |
T |
|
| Q |
413 |
aatgaacacccccag-tttgtccagcaagagtgtcattgataatgatctgtggagctctgtttgatgaatcactcaagcttggatggatttcatttaaag |
511 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47247055 |
aatgaacaccccccgatttgtctagcaagagtgtcattgataatgctttgtaatgctctgtttgatgaatcactcaagcttggatggatttcatttaaag |
47246956 |
T |
|
| Q |
512 |
tcttccaaaaataaaaatactacttcagaaagctcattaatagaactaatatgattcttcattttctgctagaacaaaatctgat |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||| |||| |
|
|
| T |
47246955 |
ccttccaaaaataaaaatactacttcagaaagctcattaatagaattaatatgactcttcattttctgttggaacaaaatttgat |
47246871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 334 - 821
Target Start/End: Original strand, 41326063 - 41326547
Alignment:
| Q |
334 |
tgtataatttcactcatagtatttcatccacatcatagaaagtcaccttttatatttttgttgttttcccgcttcaatgaatgaacacccccagtttgtc |
433 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41326063 |
tgtataatttcgctcatagtttttcatctacatcatagaaagtcaccttttatttttttgttgttttcccgcttcaatgaatgaacacccccagtttgtc |
41326162 |
T |
|
| Q |
434 |
cagcaagagtgtcattgataatgatctgtggagctctgtttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatacta |
533 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41326163 |
tagcaagagtgtcattgataatgctttgtggtgctctctttgatgaatcactcaagcttggatggatttcatttaaattcttccaaaaataaaaatacta |
41326262 |
T |
|
| Q |
534 |
cttcagaaagctcattaatagaactaatatgattcttcattttctgctagaacaaaatctgattggagagaaaaggaaaaaatagtaagataacacttac |
633 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41326263 |
cttcagaaagcttattaatagaactaatatgattcttcattttctgctggaacaaaatctgattggagagaaaaggaagcaatagtaagataacacttac |
41326362 |
T |
|
| Q |
634 |
aaatgaactaaaaatatacgcaaacaccaatttgta-ggtaattcctgcttcagagttccatttctctttttaaatgcaaaactacatgagttaattgat |
732 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41326363 |
aaatgaactaaaaatatacgcaaacaccaatgtatagggaaattcctacttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgat |
41326461 |
T |
|
| Q |
733 |
aattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttttggaatcatcaaataaagatgcagattt |
821 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41326462 |
aattatctagcaaattcaattagggaaattcttattgtgcataggagcaa---tgatgttttggaatcatcaaataaagatgcagattt |
41326547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 41325840 - 41326051
Alignment:
| Q |
13 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
112 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
41325840 |
tggttgtggcgaagcttctcttagtgattggtttgatttggatttttgtggtggcagagatggtcggagaacacgacgtcatagccgctgttaagaagat |
41325939 |
T |
|
| Q |
113 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||| |
|
|
| T |
41325940 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttat-agtgagcataaaatgtaggtctgaaagacaaat |
41326038 |
T |
|
| Q |
213 |
atataaaacaatg |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41326039 |
atataaaacaatg |
41326051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 893 - 955
Target Start/End: Original strand, 41326618 - 41326680
Alignment:
| Q |
893 |
gtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattct |
955 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41326618 |
gtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattct |
41326680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 368 - 821
Target Start/End: Original strand, 20909199 - 20909652
Alignment:
| Q |
368 |
atagaaagtcaccttttatatttttgttgttttcccgcttcaatgaatgaacacccccagtttgtccagcaagagtgtcattgataatgatctgtggagc |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||| || |
|
|
| T |
20909199 |
atagaaagtcaccttttatatttttgttgttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagtgtcattgataatgctttatggtgc |
20909298 |
T |
|
| Q |
468 |
tctgtttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactacttcagaaagctcattaatagaactaatatgatt |
567 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20909299 |
tatgtttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgatt |
20909398 |
T |
|
| Q |
568 |
cttcattttctgctagaacaaaatctgattggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttg |
667 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
20909399 |
cttcattttctgctggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtg |
20909498 |
T |
|
| Q |
668 |
tagg-taattcctgcttcagagttccatttctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattctta |
766 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20909499 |
taggctaattcctgcttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattctta |
20909597 |
T |
|
| Q |
767 |
ttgtgcataggagcaaacgtgatgttttggaatcatcaaataaagatgcagattt |
821 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20909598 |
ttgtgcataggagcaaatatgatgttttggaatcatcaaataaagatgcagattt |
20909652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 368 - 821
Target Start/End: Original strand, 20923647 - 20924100
Alignment:
| Q |
368 |
atagaaagtcaccttttatatttttgttgttttcccgcttcaatgaatgaacacccccagtttgtccagcaagagtgtcattgataatgatctgtggagc |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||| || |
|
|
| T |
20923647 |
atagaaagtcaccttttatatttttgttgttttcccgcttcaatgaatgaacacccccagtttgtctagcaagagtgtcattgataatgctttatggtgc |
20923746 |
T |
|
| Q |
468 |
tctgtttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactacttcagaaagctcattaatagaactaatatgatt |
567 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20923747 |
tatgtttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaatataaaaatactacttcagaaagctcattaatagaacaaatatgatt |
20923846 |
T |
|
| Q |
568 |
cttcattttctgctagaacaaaatctgattggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttg |
667 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
20923847 |
cttcattttctgctggaacaaaatctgattggagagaaaaggaagcaatagcaagataacacttacaaatgaactaaaaatatatgcaaacaccaatgtg |
20923946 |
T |
|
| Q |
668 |
tagg-taattcctgcttcagagttccatttctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattctta |
766 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20923947 |
taggctaattcctgcttcagagttccatttctc-ttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattctta |
20924045 |
T |
|
| Q |
767 |
ttgtgcataggagcaaacgtgatgttttggaatcatcaaataaagatgcagattt |
821 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20924046 |
ttgtgcataggagcaaatatgatgttttggaatcatcaaataaagatgcagattt |
20924100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 20908907 - 20909202
Alignment:
| Q |
13 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
20908907 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggagaacacgacgtcatagtcgctgttaagaagat |
20909006 |
T |
|
| Q |
113 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||| |
|
|
| T |
20909007 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttaggagtgagcataaaatttagggttgaaagacaaat |
20909106 |
T |
|
| Q |
213 |
atataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattgatgtatcaaatgagatgatccaattgtattacttgcaatag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20909107 |
atataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattgatgtatcaaatgagatgatccacttgtattacttgcaatag |
20909202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 20923355 - 20923650
Alignment:
| Q |
13 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
20923355 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggagaacacgacgtcatagtcgctgttaagaagat |
20923454 |
T |
|
| Q |
113 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||| |
|
|
| T |
20923455 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttaggagtgagcataaaatttagggttgaaagacaaat |
20923554 |
T |
|
| Q |
213 |
atataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattgatgtatcaaatgagatgatccaattgtattacttgcaatag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20923555 |
atataaaacaatgtcgataaactttaaaagtgataatatgatgtgcggtcaattgatgtatcaaatgagatgatccacttgtattacttgcaatag |
20923650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 472 - 824
Target Start/End: Complemental strand, 27445694 - 27445339
Alignment:
| Q |
472 |
tttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactacttcagaaagctcattaatagaactaatatgat-tctt |
570 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |||||| |||| |||||||||||||| | || | |||| |
|
|
| T |
27445694 |
tttgatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctt |
27445595 |
T |
|
| Q |
571 |
cattttctgctagaacaaaatctgattggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtag |
670 |
Q |
| |
|
|||||||| | || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | |
|
|
| T |
27445594 |
tattttctgttggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttg |
27445495 |
T |
|
| Q |
671 |
g-taattcctgcttcagagttccatttctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattg |
769 |
Q |
| |
|
| ||||| |||||||||| | || | | ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27445494 |
gctaattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattg |
27445395 |
T |
|
| Q |
770 |
tgcataggagcaaacgtgatgttttggaatcatcaaataaaga-tgcagatttaac |
824 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
27445394 |
tgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaac |
27445339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 893 - 955
Target Start/End: Original strand, 20909724 - 20909786
Alignment:
| Q |
893 |
gtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattct |
955 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20909724 |
gtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattct |
20909786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 893 - 955
Target Start/End: Original strand, 20924172 - 20924234
Alignment:
| Q |
893 |
gtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattct |
955 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20924172 |
gtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattct |
20924234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 172; Significance: 6e-92; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 472 - 824
Target Start/End: Original strand, 41664 - 42019
Alignment:
| Q |
472 |
tttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactacttcagaaagctcattaatagaactaatatgat-tctt |
570 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| |||||| |||| |||||||||||||| | || | |||| |
|
|
| T |
41664 |
tttgatgaatcactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataacatctt |
41763 |
T |
|
| Q |
571 |
cattttctgctagaacaaaatctgattggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtag |
670 |
Q |
| |
|
|||||||| | || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | |
|
|
| T |
41764 |
tattttctgttggagcaaaatctgtttggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttg |
41863 |
T |
|
| Q |
671 |
g-taattcctgcttcagagttccatttctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattg |
769 |
Q |
| |
|
| ||||| |||||||||| | || | | ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41864 |
gctaattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattg |
41963 |
T |
|
| Q |
770 |
tgcataggagcaaacgtgatgttttggaatcatcaaataaaga-tgcagatttaac |
824 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
41964 |
tgcataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaac |
42019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 472 - 806
Target Start/End: Original strand, 34994 - 35330
Alignment:
| Q |
472 |
tttgatgaatcactcaagcttggatggatttcatttaaagtcttccaaaaataaaaatactacttcagaaagctcattaatagaactaatatgat-tctt |
570 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||| |||||| |||| |||||||||||||| | || |||| |
|
|
| T |
34994 |
tttgatgaaacactcaagcttggatggatgtcattttaagtcttccaaaaatcaaaatattacttcggaaaaatcattaatagaactgacataccatctt |
35093 |
T |
|
| Q |
571 |
cattttctgctagaacaaaatctgattggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaatttgtag |
670 |
Q |
| |
|
|||||||| | || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | |
|
|
| T |
35094 |
tattttctgttggagcaaaatctgtatggagagaaaaggaagcaatagtaagataacacttacaaatgaactaaaaatatatgcaaacaccagtatgttg |
35193 |
T |
|
| Q |
671 |
g-taattcctgcttcagagttccatttctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattg |
769 |
Q |
| |
|
| ||||| |||||||||||| || | | ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35194 |
gctaattgctgcttcagagtgccctattactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattg |
35293 |
T |
|
| Q |
770 |
tgcataggagcaaacgtgatgttttggaatcatcaaa |
806 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
35294 |
tgcataggagcaaacatgatattttggaatcctcaaa |
35330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 34871 - 34950
Alignment:
| Q |
351 |
agtatttcatccacatcatagaaagtcaccttttatatt-tttgttgttttcccgcttcaatgaatgaacacccccagtt |
429 |
Q |
| |
|
|||||||||| | |||||| |||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
34871 |
agtatttcatttagatcataaaaagtcacctttcatagcctttgttgttttcatgcttcaaggaatgaacacccccagtt |
34950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 8e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 672 - 824
Target Start/End: Complemental strand, 11504856 - 11504704
Alignment:
| Q |
672 |
taattcctgcttcagagttccatttctctttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtg |
771 |
Q |
| |
|
||||| |||||| ||||| ||||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
11504856 |
taattgctgctttagagtgccatttccctttt-aaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg |
11504758 |
T |
|
| Q |
772 |
cataggagcaaacgtgatgttttggaatcatcaaataaaga-tgcagatttaac |
824 |
Q |
| |
|
|||||||| |||| | ||||||| ||||||||||| | ||| |||||||||||| |
|
|
| T |
11504757 |
cataggagtaaacataatgttttagaatcatcaaaaacagattgcagatttaac |
11504704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 893 - 955
Target Start/End: Complemental strand, 11504628 - 11504566
Alignment:
| Q |
893 |
gtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattct |
955 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||| |||| |||||||||||||||| |
|
|
| T |
11504628 |
gtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattct |
11504566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 586 - 664
Target Start/End: Complemental strand, 50717756 - 50717679
Alignment:
| Q |
586 |
caaaatctgattggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaat |
664 |
Q |
| |
|
||||||| || ||||| ||||||||| |||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
50717756 |
caaaatcagaatggagtgaaaaggaatcaataataagataacacttacaaa-gaactaaaaaaatatgcaaacaccaat |
50717679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 586 - 664
Target Start/End: Original strand, 50795092 - 50795169
Alignment:
| Q |
586 |
caaaatctgattggagagaaaaggaaaaaatagtaagataacacttacaaatgaactaaaaatatacgcaaacaccaat |
664 |
Q |
| |
|
||||||| || ||||| ||||||||| |||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
50795092 |
caaaatcagaatggagtgaaaaggaatcaataataagataacacttacaaa-gaactaaaaaaatatgcaaacaccaat |
50795169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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