View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9028_low_10 (Length: 470)
Name: NF9028_low_10
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 454
Target Start/End: Complemental strand, 42464829 - 42464387
Alignment:
| Q |
12 |
aacctgtgaaaaggttataataatcccgctgagcttttaatatcaagcaatttgttcggtcacattcgcaaaaaatgttaacattcgatttattttacca |
111 |
Q |
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| T |
42464829 |
aacctatgaaaaggttataataatcccgctgagcttttaatatcaagcaatttattcaatcatattcgctaaaaatgttaacattcgatttattatacca |
42464730 |
T |
|
| Q |
112 |
tcatacaattggaaatccatgctttattaatatccaagaatggcacatagtgcatcgcaccgatctaaagggcatatttagaaatcaacttggtgtgaca |
211 |
Q |
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| T |
42464729 |
tcatacaattggaaatccatgctttattaatatccaagaatggcacatagtgcattgcaccgatctaaagggcatatttagaaatcaacttggtgtgaca |
42464630 |
T |
|
| Q |
212 |
caaatggtagatgcttgagtcacttaacaatgtgacgtagggttcgatctctgacctctgttccaagcaggaaggaaatttatttcaaaagcgcgtgaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42464629 |
caaatggtagatgcttgagtcacttaacaatgtgacgtagggttcgatctctgacctctgttccaagcaggaaggaaatttatttcaaaagcgcgtgaca |
42464530 |
T |
|
| Q |
312 |
aaactccaacacatgtaacacattattaaaggttagactcattgatggtgttaagcaccctcgtaactcttccagtaaacaatgcagtgtatgctataca |
411 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42464529 |
aaactccaacacacgtaacacattattaaaggttagactcattgatggtgttaagcaccctcgtaactcttccagtaaacaatgcagtgtatgctataca |
42464430 |
T |
|
| Q |
412 |
gagtccagattactttacaagtatacaaagcccatatacttac |
454 |
Q |
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| T |
42464429 |
gagtccagattactttacaagtatacaaagcccatatacttac |
42464387 |
T |
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