View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9028_low_12 (Length: 360)
Name: NF9028_low_12
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 53868454 - 53868120
Alignment:
| Q |
18 |
caaatatatgacccaagtactctacaaaatacctatgcaacaaaggcaatccataatttctatggtatattggcgtaatgaacacttaaatatcattttt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53868454 |
caaatatatgacccaagtactctacaaaatacctatgtaacaaaggcaatccataatttctatgttatattggcgtaatgaacacttaaatatcattttt |
53868355 |
T |
|
| Q |
118 |
cacctgtcattggcgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaa |
217 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53868354 |
cacctgtcatgaacgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaa |
53868255 |
T |
|
| Q |
218 |
gatatttcttgtttccctgcaaacaaaatgataaaacacgagcatgaagaaagaaatgcaagatatgaaaaatgaatatatcaaatgaagacacgggcca |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
53868254 |
gatatttcttgtttccctgcaaacaaaatgataaaacacgagcatgaagaaagaaatgcaagatatgaaaaataaatatatcaaatgaagaaacgggcca |
53868155 |
T |
|
| Q |
318 |
tatgtcgatcatgtatcatttaccatagaattatc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
53868154 |
tatgtcgatcatgtatcatttaccatagaattatc |
53868120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 54158856 - 54159187
Alignment:
| Q |
18 |
caaatatatgacccaagtactctacaaaatacctatgcaacaaaggcaatccataatttctatggtatattggcgtaatgaacacttaaatatcattttt |
117 |
Q |
| |
|
|||||||| |||||| ||| | |||||||| |||||| |||||||| | ||| || |||| ||||||||| ||| ||||||||||||||||||||| || |
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| T |
54158856 |
caaatatacgacccacgtattttacaaaatccctatgtaacaaaggtagtccctattttcaatggtatataggcataatgaacacttaaatatcatcatt |
54158955 |
T |
|
| Q |
118 |
cacctgtcattggcgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaa |
217 |
Q |
| |
|
|||||||||| | | || ||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||| |
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|
| T |
54158956 |
cacctgtcatgaacaataattgcaatgtcacaagaggccaaagactccttattcgccagcagccctttaactccatcttcaggaatctctctcagcacaa |
54159055 |
T |
|
| Q |
218 |
gatatttcttgtttccctgcaaacaaaatgataaaacacgagcatgaagaaagaaatgcaagata-tgaaaaatgaatatatcaaatgaagacacgggcc |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||||| | |
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|
| T |
54159056 |
gatatttcttctttccctgcaaacaaaatgataaaacataaatatgaagaaagaaatgcaagatattaaaaaatgaatatatcaaatgaagacacgggtc |
54159155 |
T |
|
| Q |
317 |
atatgtcgatcatgtatcatttaccatagaat |
348 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
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|
| T |
54159156 |
atatgtgaatcatgtatcatttaccatagaat |
54159187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 139 - 282
Target Start/End: Original strand, 51365889 - 51366031
Alignment:
| Q |
139 |
gcaacgtcacaagaggccaaagacttattattcgccagcagctctcta-actccatcttcaggaatttctctcagcacaagatatttcttgtttccctgc |
237 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||| ||||| |||||||||||| |||| ||| ||| ||||||||||||||||||||||||| |
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|
| T |
51365889 |
gcaatgtcacaagaggccaaagactccttattagccagcagttctcttgactccatcttcatgaatctctttcaacacaagatatttcttgtttccctgc |
51365988 |
T |
|
| Q |
238 |
aaacaaaatgataaaacacgagcatgaagaaagaaatgcaagata |
282 |
Q |
| |
|
|| |||||||||||| || | ||||||||||||||||||||| |
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|
| T |
51365989 |
aa--ctaatgataaaacatgaacttgaagaaagaaatgcaagata |
51366031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 15048241 - 15048373
Alignment:
| Q |
117 |
tcacctgtcattggcgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcaca |
216 |
Q |
| |
|
||||||||||| | |||| ||||| |||||| |||||||||||||| ||||| || ||||||| | | ||||| |||||| ||| |||||||||||| |
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|
| T |
15048241 |
tcacctgtcataaacaaaaattgcaatgtcacatgaggccaaagacttcttattggctagcagctttgtgactcctccttcagaaatctctctcagcaca |
15048340 |
T |
|
| Q |
217 |
agatatttcttgtttccctgcaaacaaaatgat |
249 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||| |
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|
| T |
15048341 |
agatattttttgttttcctacaaacaaaatgat |
15048373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 17881024 - 17881140
Alignment:
| Q |
133 |
aaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttcttgtttc |
232 |
Q |
| |
|
||||| |||| |||||| ||||||||||||| ||||| || ||||||| | | |||||| |||||| ||| |||||||||||||||||||| |||||| |
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|
| T |
17881024 |
aaaaccgcaatgtcacatgaggccaaagactccttattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttgtttt |
17881123 |
T |
|
| Q |
233 |
cctgcaaacaaaatgat |
249 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
17881124 |
cctacaaacaaaatgat |
17881140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 252
Target Start/End: Original strand, 15015504 - 15015639
Alignment:
| Q |
117 |
tcacctgtcattggcgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcaca |
216 |
Q |
| |
|
||||||||||| | |||||||||| |||||| ||| ||| ||||| || || || ||||||| | |||||||| |||||| ||| |||||||||||| |
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|
| T |
15015504 |
tcacctgtcatgaacaaaaactgcaatgtcacatgagcccagagactccttgtttgctagcagctttgtaactccaccttcagaaatctctctcagcaca |
15015603 |
T |
|
| Q |
217 |
agatatttcttgtttccctgcaaacaaaatgataaa |
252 |
Q |
| |
|
| |||||| |||||| ||| ||||||||||| |||| |
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|
| T |
15015604 |
atatattttttgttttcctacaaacaaaatggtaaa |
15015639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 245
Target Start/End: Original strand, 14773768 - 14773869
Alignment:
| Q |
144 |
gtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttcttgtttccctgcaaacaa |
243 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||||||| | |||||| ||||| ||| ||||||| |||||||||||| |||||| ||| |||| || |
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|
| T |
14773768 |
gtcacatgaggccaaagactccttgttggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttgttttcctacaaataa |
14773867 |
T |
|
| Q |
244 |
aa |
245 |
Q |
| |
|
|| |
|
|
| T |
14773868 |
aa |
14773869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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