View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9028_low_18 (Length: 273)
Name: NF9028_low_18
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_18 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 42573881 - 42574132
Alignment:
| Q |
22 |
agaactagaagtgttggtttggttcgataacatcctataggaatagagaggacgaaaatgcattaaagacaaagcacatcacatggggtattccatcaca |
121 |
Q |
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| T |
42573881 |
agaactagaagtgttggtttggttcgataatatcctataggaatagagaggacgaaaatgcattaaagacaaagcacatcacatggggtattccatcaca |
42573980 |
T |
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| Q |
122 |
aatataggcaatatattgtatttgttatatggtggatatcttccacatagacagctctttgaagtagaaccattgacccatcaaattattgtcacagaaa |
221 |
Q |
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| T |
42573981 |
aatataggcaatatattgtatttgttatatggtggatatcttccacatagacagctccttgaagtagaaccattgacccatcaaattattgtcacagaaa |
42574080 |
T |
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| Q |
222 |
gtgaccccaaaatgacgcttattactacaattataatatatcatgttcctgg |
273 |
Q |
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| T |
42574081 |
gtgaccccaaaatgacgcttattactacaattataatatatcatgttcctgg |
42574132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 27 - 273
Target Start/End: Complemental strand, 1824 - 1570
Alignment:
| Q |
27 |
tagaagtgttggtttggttcgataacatcctataggaatagagaggacgaaaatgcattaaagacaaagcacatcacatggggtattccat--cacaaat |
124 |
Q |
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| T |
1824 |
tagaagtgttggtttggttcgataatatcctataggaatagagaggacgaaaatgcattaaagacaaagcacatcacatggggtattccatcacacaaat |
1725 |
T |
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| Q |
125 |
ataggcaatatattgtatttgttatatggtggatatcttccacatagacagctcttt------gaagtagaaccattgacccatcaaattattgtcacag |
218 |
Q |
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| T |
1724 |
ataggcaatatattgtatttgttatatggtggatatcttccacatagacagctccttgaagtagaagtagaaccattgacccatcaaattattgtcacag |
1625 |
T |
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| Q |
219 |
aaagtgaccccaaaatgacgcttattactacaattataatatatcatgttcctgg |
273 |
Q |
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| T |
1624 |
aaagtgaccccaaaatgacgcttattactacaattataatatatcatgttcctgg |
1570 |
T |
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