View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9028_low_22 (Length: 235)
Name: NF9028_low_22
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 26371192 - 26371136
Alignment:
| Q |
7 |
atcaaaataacgccgcaccaagacgacaaacaaagcaacacatcacactaagacgaa |
63 |
Q |
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| T |
26371192 |
atcaaaataacgtcgcaccacggcgacaaacaaagcaacacatcacactaagacgaa |
26371136 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 26371070 - 26370956
Alignment:
| Q |
129 |
aaattagagagatgatttagtaggaaaaaa-ttgaccataaaccaccgcttaacnnnnnnngaa-------gagaaagagtttttggagtggcagctaaa |
220 |
Q |
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||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
26371070 |
aaattagagaggtgatttagtagaaaaaaaattgaccataaaccaccgcttaacaaaaaaaaaaaaaaaaagagaaagagtttttggagtggcagctaaa |
26370971 |
T |
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| Q |
221 |
tttagtttttaaaaa |
235 |
Q |
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|||| |||||||||| |
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| T |
26370970 |
tttattttttaaaaa |
26370956 |
T |
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