View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9028_low_24 (Length: 203)
Name: NF9028_low_24
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 40511467 - 40511628
Alignment:
| Q |
24 |
taggtttggtatatattgtttattttaagagaaagagagaagaaatgttaacaaagactgtatgctctcctcttcctttgtatgtgtggatacaaattgc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |
|
|
| T |
40511467 |
taggtttggtatatattgtttattttaagagaaagagagaagaaatgttaacaaagactgttttctctcctcttcctttgtatgcttggatacaaattgc |
40511566 |
T |
|
| Q |
124 |
gaagagaattaaaattatttttgaaatgataataatatccttaaatttaaaacataatatgt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
40511567 |
gaagagaattaaaattatttttgaaatgacaaaaatatccttaaatttaaaacataatatgt |
40511628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University