View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9028_low_3 (Length: 600)
Name: NF9028_low_3
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 216 - 433
Target Start/End: Complemental strand, 40482719 - 40482502
Alignment:
| Q |
216 |
cattacataaccttgatatgcgtcagaaatgaagtttcattcatgggttccaatttaggtgatcaggtctgaaagtaacgataaaagtataaccacaaaa |
315 |
Q |
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| T |
40482719 |
cattacataaccttgatatgcgtcagaaatgaagtttcattcatgggttccaatttaggtgatcaggtctgagagtaacgataaaagtataaccacaaaa |
40482620 |
T |
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| Q |
316 |
atgcattgagtatattttgtactgtggatagtgtggaaggtattacaatacaaattacaaacgaccactttacttcacacatgatatatttcttggaagg |
415 |
Q |
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| T |
40482619 |
atacattgagtatattttgtactgtggatagtgtggaaggtattacaatacaaattacaaacgaccactttacttcacacatgatatatttcttggaagg |
40482520 |
T |
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| Q |
416 |
tgcttggggttaaatact |
433 |
Q |
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| T |
40482519 |
tgcttggggttaaatact |
40482502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 59 - 197
Target Start/End: Complemental strand, 40482919 - 40482785
Alignment:
| Q |
59 |
gtggatcagaattggggaggaaaccgccagatacctcattggattttaattttgaccgtttggcaaagcatattatttctgtcctattttggcagataat |
158 |
Q |
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| T |
40482919 |
gtggatcagaattggggaggaaaacgccagatacctcattggacttt----ttgaccgtttagcaaagcatattatttctgtcctattttggcagataat |
40482824 |
T |
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| Q |
159 |
gtttcaacaagcacgtttgcttgcaagtgccaaattcta |
197 |
Q |
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| T |
40482823 |
gtttcaacaagcacgtttgcttgcaagtgccaaattcta |
40482785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 494 - 584
Target Start/End: Complemental strand, 40482400 - 40482310
Alignment:
| Q |
494 |
gtaacaaaatatcaaatttgaggtcattgacttacaagtgtcgtgtgagctagagtcaagcaactattgaacgaactacctccgttgatgc |
584 |
Q |
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| T |
40482400 |
gtaacaaaatatcaaatttgagatcattgacttacaagtgtcgtgtgagctagagtcaagcaactattgaacgaactacctccgttgatgc |
40482310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 443 - 569
Target Start/End: Complemental strand, 40492913 - 40492783
Alignment:
| Q |
443 |
atacttaattagttttatgttttcgtaac---ttttatattggataaattcatagtaacaaaatatcaaattt-gaggtcattgacttacaagtgtcgtg |
538 |
Q |
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| T |
40492913 |
atacttaattcgttttatgttttcttaaaattttttatattggatgaattcagtgtaataaaatatcaaattttgacatcgtagacttacaagtgtcgtg |
40492814 |
T |
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| Q |
539 |
tgagctagagtcaagcaactattgaacgaac |
569 |
Q |
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| T |
40492813 |
tgagctagagtcaagcaactattgaacgaac |
40492783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 471
Target Start/End: Complemental strand, 40482437 - 40482396
Alignment:
| Q |
430 |
tactattttttacatacttaattagttttatgttttcgtaac |
471 |
Q |
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| T |
40482437 |
tactattttttacatacttaattagttttatgttttcgtaac |
40482396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 40494102 - 40494070
Alignment:
| Q |
351 |
gaaggtattacaatacaaattacaaacgaccac |
383 |
Q |
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| T |
40494102 |
gaaggtattacaatacaaattacaaacgaccac |
40494070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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