View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9028_low_4 (Length: 598)
Name: NF9028_low_4
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_4 |
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| [»] scaffold0439 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 124 - 564
Target Start/End: Complemental strand, 20039774 - 20039334
Alignment:
| Q |
124 |
taacagacttctaacttaacaaactaatccaaacatacaaaaccttttccaagtccatttcagccatggttacaagtcgagtagcgtgtccttttctccg |
223 |
Q |
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| T |
20039774 |
taacacacttctaacttaacaaactaatccaaacatacaaaaccttttccaagtccatttgagccatggtcacaagtcgagtagcgtgtccttttctccg |
20039675 |
T |
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| Q |
224 |
aaagatagggttaacgaagagggaagtgatatgaccataaacgttacgcttcagttcaccaacatcaaagacgatgtaaccgaagataatgcctaggaga |
323 |
Q |
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| T |
20039674 |
aaagatagggttaacgaagagggaagtgatatgaccgtaaccgttatgcttcagttcaccaacatcaaagacgatgtaaccgaagataatgcctaggaga |
20039575 |
T |
|
| Q |
324 |
tcatccgtggcaacttgaagaagcttaccattcaccaaactttgagtatccacgtcaggtaaaacagcatccacaagaatcttaaataggtcaacaggtg |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20039574 |
tcatccgtggcaacttgaagaagcttaccattcaccaaactttgagtatccacgtcaggtaaaacagcatccacaagaatcttaaataggtcaacaggtg |
20039475 |
T |
|
| Q |
424 |
ttgcgtctcttacgactacacccggggagatcatcgttgtagaaagaattttgattgacttcactgtttcagatttggctaggttccgctgattagcgct |
523 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20039474 |
ttgcgtctcttacgactacacccggggagatcatcgttgtagaaagaattttgattgacttcactgtttcagatttggctaggttccgctgatcagcgct |
20039375 |
T |
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| Q |
524 |
gaaaaacaatatatggaattgtgtgtaacacaagttttaat |
564 |
Q |
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| T |
20039374 |
gaaaaacaatatatggaattgtgtgtaacacaagttttaat |
20039334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 20039849 - 20039770
Alignment:
| Q |
2 |
gtaagcagcaccttgctacaaacacaggtaaagtaaccat-taaaagaagacacacttgttagttatacacaatctaaca |
80 |
Q |
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| T |
20039849 |
gtaagcagcaccttgctacaaacacaggtaaagtaaccatattaaagaagacacacttgttagttatacacaatctaaca |
20039770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0439 (Bit Score: 145; Significance: 5e-76; HSPs: 2)
Name: scaffold0439
Description:
Target: scaffold0439; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 163 - 439
Target Start/End: Original strand, 5228 - 5504
Alignment:
| Q |
163 |
aaaccttttccaagtccatttcagccatggttacaagtcgagtagcgtgtccttttctccgaaagatagggttaacgaagagggaagtgatatgaccata |
262 |
Q |
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| T |
5228 |
aaaccttgtccaagtccatttcggcattggtcacaagtcgagtagcgtgtccttttctctgaaagatacggttaatgaagagggaagtgatatgaccata |
5327 |
T |
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| Q |
263 |
aacgttacgcttcagttcaccaacatcaaagacgatgtaaccgaagataatgcctaggagatcatccgtggcaacttgaagaagcttaccattcaccaaa |
362 |
Q |
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| T |
5328 |
accagtacgcttcagttcaccattatcaaagacaatgaaaccgaggataacgcctaggagcttatcctcggcgacttgaagaatcttaccattcgccaaa |
5427 |
T |
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| Q |
363 |
ctttgagtatccacgtcaggtaaaacagcatccacaagaatcttaaataggtcaacaggtgttgcgtctcttacgac |
439 |
Q |
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| T |
5428 |
gttttaacatcgacgttagggaaaatagcatccataagaatcttaaataggtcaacaggtgttgcgtctcttacgac |
5504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0439; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 5082 - 5192
Alignment:
| Q |
40 |
attaaaagaagacacacttgttagttatacacaatctaaca-----taacacctgacatatatgattttaacaaacttaacaatatcaataacagacttc |
134 |
Q |
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| T |
5082 |
attaaaagaagacacaattgttaattatactcaatctaactcctcctaacat-taacatatatgattttaactaact-aacaatagctataacagacata |
5179 |
T |
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| Q |
135 |
taacttaacaaac |
147 |
Q |
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||||||||||||| |
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| T |
5180 |
taacttaacaaac |
5192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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