View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9028_low_5 (Length: 521)
Name: NF9028_low_5
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9028_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 7398247 - 7398769
Alignment:
| Q |
1 |
gaaattagagagaaaaataattaaattcactaacttggtctagaacattttgaatgttcctcccgtgttcaatggcgagacgttgaatccttcgtgtaag |
100 |
Q |
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| T |
7398247 |
gaaattagagagaaaaataattaaattcactaacttggtctagaacattttgaatgttcctcccgcgttcaatggcgagacgttgaatccttcgtgtaag |
7398346 |
T |
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| Q |
101 |
acgcacatcagaatctgcatttcttaaaccctaacagtatttttaaccatatatttgtattgctaata-aaagtataattttcattgatttacaatctaa |
199 |
Q |
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| T |
7398347 |
acgcacatcagaatctgcatttcttaaaccctaacagtatttttaaccatatatttgtattgctaatattaagtataattttcatggatttacaatctaa |
7398446 |
T |
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| Q |
200 |
atgagaatgatgaaaacaagtacattttaatacaataatttcatgttattgaaatttaatatataacaataaaaacctaaagaaaaatagatgttgatat |
299 |
Q |
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| T |
7398447 |
atgagaatgatgaaaacaagtacattttaatacaataatttcatgttattgaaatttaatatataacaataaaaagctaaagaaaaatagatgttgatat |
7398546 |
T |
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| Q |
300 |
a-nnnnnnncgaagttatgatgcactgcatcctttcaataatgtgttcaataatgtaaacattttaaagtatagtcaatttggataagatagaaaatcag |
398 |
Q |
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| T |
7398547 |
attttttttcgaagttatgatgcactgcatcctttcaa-----tgttcaataatgtaaacattttaaagtatagtcaatttggataagatagaaaatcag |
7398641 |
T |
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| Q |
399 |
aaatattcttcttc----nnnnnnnnnggtctagaaatata-nnnnnnnnaactagccaaaatgaaatatataaacactgcattctcccttgattaaggc |
493 |
Q |
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| T |
7398642 |
aaatattcttcttcttttttttattttggtctagaaatatatttttttttaactagccaaaatggaatatataaacactgcattctcccttgattaaggc |
7398741 |
T |
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| Q |
494 |
ataccagagagaacatcaacgttttacg |
521 |
Q |
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| T |
7398742 |
ataccagagagaacatcaacgttttacg |
7398769 |
T |
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