View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9028_low_9 (Length: 501)

Name: NF9028_low_9
Description: NF9028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9028_low_9
NF9028_low_9
[»] chr3 (2 HSPs)
chr3 (175-501)||(43195628-43195949)
chr3 (40-150)||(43195944-43196054)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 175 - 501
Target Start/End: Complemental strand, 43195949 - 43195628
Alignment:
Q  175 atagtgcgaagaaaaaataagtgaaaaattattataaacatggagggttacattgagnnnnnnnacaccataacaattctagtctttggggagcattggg 274  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||    
T  43195949 atagtgcgaagaaaaaataagcgaaaaattattataaacatggagggttacattgagtttttttacaccataacaattctagtctttggggtgcattggg 43195850  T
Q  275 gacttgaatatttgtgtctttggtagagtttccaattttttgtgcaaaagtgtggggaagggtttataatttttcctttggataatttgagctaactatt 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43195849 gacttgaatatttgtgtctttggtagagtttccaattttttgtgcaaaagtgtggggaagggtttataatttttcctttggataatttaagctaactatt 43195750  T
Q  375 aaggtagacattatcccgtnnnnnnnnnnnnnnnnnnttaaggtagacttcatgaataataaagtagacaaagccacaaaactatttacatattactgcc 474  Q
    ||||||||||||||||| |                  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||    
T  43195749 aaggtagacattatcccct-----aaaaaaaaaaaatttaaggtagacttcatgactaataaagtagacaaagtcacaaaactatttacatattactccc 43195655  T
Q  475 caacaaaattttttcgctaaggaacac 501  Q
    |||||| ||||||||||||||||||||    
T  43195654 caacaagattttttcgctaaggaacac 43195628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 43196054 - 43195944
Alignment:
Q  40 aggtaccaggaatagtgtttccaatccatacaaacgtttagtttagagaatgtcattgacttattagtagaaacatgtcagatcttagatccacaagtca 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43196054 aggtaccaggaatagtgtttccaatccatacaaacgtttagtttagagaatgtcattgacttattagtagaaacatgtcagatcttagatccacaagtca 43195955  T
Q  140 atggaatagtg 150  Q
    |||||||||||    
T  43195954 atggaatagtg 43195944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University