View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_high_9 (Length: 219)
Name: NF9029_high_9
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_high_9 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 30935454 - 30935256
Alignment:
| Q |
21 |
ggcaatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgag |
120 |
Q |
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| T |
30935454 |
ggcaatggggtgggatctctgtatgtgctgctgcttcactagcacttctgacatatttccaaagcagaataaattgaagtggcaaatcttcccctatgag |
30935355 |
T |
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| Q |
121 |
caacttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacatgaaaa |
219 |
Q |
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| T |
30935354 |
ctacttaggaaagccacaaattattttgatgaagctcacattcttgaaaagaaaggctctgccactatatattatggtaagcggtcttttacctgaaaa |
30935256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 30994360 - 30994179
Alignment:
| Q |
24 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgagcaa |
123 |
Q |
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| T |
30994360 |
aatgaggtgggatatctgtatgtgttgctgcttcactagcacatctgaaacatttccaaagcagagtaaattgaattggcaaatcttcccatatgagcaa |
30994261 |
T |
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| Q |
124 |
cttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagt |
205 |
Q |
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| T |
30994260 |
cttagaaaagccacaaattattttgatgaagctcacattcttgataagaaaggctcgcccactgtatattatggtaagaagt |
30994179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 30965507 - 30965418
Alignment:
| Q |
130 |
aaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacatgaaaa |
219 |
Q |
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| T |
30965507 |
aaagccacatattattttgatcaagctcacattcttgaaaagagaggctcggccactgtatattatggtaagaagtcttttacatgaaaa |
30965418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 30965564 - 30965503
Alignment:
| Q |
24 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagc |
85 |
Q |
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| T |
30965564 |
aatgaggtgagatctctctatgtgctgctgcttcactagcacttctgaaacatttccaaagc |
30965503 |
T |
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