View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9029_low_1 (Length: 718)

Name: NF9029_low_1
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9029_low_1
NF9029_low_1
[»] chr2 (4 HSPs)
chr2 (182-442)||(38262991-38263250)
chr2 (11-167)||(562684-562841)
chr2 (193-330)||(38205851-38205988)
chr2 (513-651)||(38263326-38263454)
[»] chr5 (4 HSPs)
chr5 (11-181)||(28085787-28085958)
chr5 (11-165)||(11894252-11894406)
chr5 (224-327)||(12413758-12413861)
chr5 (224-301)||(12323586-12323665)
[»] chr1 (2 HSPs)
chr1 (80-185)||(10039714-10039819)
chr1 (11-53)||(10039832-10039874)
[»] chr6 (2 HSPs)
chr6 (11-168)||(33846571-33846728)
chr6 (215-282)||(17733027-17733094)
[»] chr7 (4 HSPs)
chr7 (210-442)||(3292225-3292458)
chr7 (182-330)||(2988452-2988600)
chr7 (210-301)||(22322661-22322749)
chr7 (244-328)||(3125320-3125404)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 182 - 442
Target Start/End: Original strand, 38262991 - 38263250
Alignment:
Q  182 ttttgatatcgtgttgtctttatacgttccatcaaaatcacatgaagttgcaattacatatgttatgcttaacttttgcattgtggaatcatatgaacta 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38262991 ttttgatatcgtgttgtctttatacgttccatcaaaatcacatgaagttgcaattacatatgttatgcttaacttttgcattgtagaatcatatgaacta 38263090  T
Q  282 tttcttgtaatttgactatgtcttttaatgtttaattgccttcttgcaggcacaacgaggtggaggatcaaatgcttaaacattaatcaagaacaagact 381  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38263091 tttcttgtaatttgactatgtcttttaatg-ttaattgccttcttgcaggcacaacgaggtggaggatcaaatgcttaaacattaatcaagaacaagact 38263189  T
Q  382 ttcaaatgaagagacaaagatcttatgcttagagttaactattgtcaacataaagtcgtga 442  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  38263190 ttcaaatgaagagacaaagatcttatgcttagagtcaactattgtcaacataaagttgtga 38263250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 562684 - 562841
Alignment:
Q  11 gagatggacatcacggtggagagagaacggtgacatccaatttgaaaattcaatannnnnnnnnnnnnn-gttgggctggcactctttatggaatatttt 109  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||    
T  562684 gagatagacataacggtggagggagaacggtgacatccaatttgaaaattcaatattttttattttttttgttgggctggcactctttatggaatatttt 562783  T
Q  110 atatattttttgacatatggaagggtgtgtgagggaggtatgccacgtgagggtgtgt 167  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  562784 atatatattttgacatatggaagggtgtgtgagggaggtatgccacgtgagggtgtgt 562841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 193 - 330
Target Start/End: Complemental strand, 38205988 - 38205851
Alignment:
Q  193 tgttgtctttatacgttccatcaaaatcacatgaagttgcaattacatatgttatgcttaacttttgcattgtggaatcatatgaactatttcttgtaat 292  Q
    ||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  ||||||||||| ||| ||||| |||    
T  38205988 tgttgtctttatatgtctcatcaaaatcacttgaagttgcaattacatatgttatgcttaacttatgcattgtaaaatcatatgaaatatctcttgcaat 38205889  T
Q  293 ttgactatgtcttttaatgtttaattgccttcttgcag 330  Q
    |||| ||||  ||||||| |||||||| ||| ||||||    
T  38205888 ttgattatgcattttaatatttaattgactttttgcag 38205851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 513 - 651
Target Start/End: Original strand, 38263326 - 38263454
Alignment:
Q  513 aactgtaatgcatgtttgctaccgaaacttataatgtattgttttaaaaagttcggcgatcaaataaattcatataagtttctaagattttagtggtgca 612  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||||||  |  ||||||||||||||| |||||||||||||||||              
T  38263326 aactgtaatgcatgttttctaccgaaacttataatgttttattttaaaaagtctgatgatcaaataaattcaaataagtttctaagattt---------- 38263415  T
Q  613 gagcaaatctacaacataaccataattatttagtagtat 651  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  38263416 gagcaaatctacaacgtgaccataattatttagtagtat 38263454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 28085958 - 28085787
Alignment:
Q  11 gagatggacatcacggtggagagagaacggtgacatccaatttgaaaattcaatannnnnnnnnnnnnn-gttgggctggcactctttatggaatatttt 109  Q
    ||||| ||||| |||||||||||||||||| || |||||||||||||||||||||               ||||||||||||||||||||||||||||||    
T  28085958 gagatagacataacggtggagagagaacggggatatccaatttgaaaattcaatattttttattttttttgttgggctggcactctttatggaatatttt 28085859  T
Q  110 atatattttttgacatatggaagggtgtgtgagggaggtatgccacgtgagggtgtgtgggtatcatcactc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28085858 atatattttttgacatatggaagggtgtgtgagggaggtatgccacgtgagggtgtgtgtgtatcatcactc 28085787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 11894252 - 11894406
Alignment:
Q  11 gagatggacatcacggtggagagagaacggtgacatccaatttgaaaattcaatannnnnnnnnnnnnngttgggctggcactctttatggaatatttta 110  Q
    ||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||              ||||||| | ||||||||||| |||||||||    
T  11894252 gagatagacataatggtggagagagaacggtgacatccaatttaaaaattcaatattttttatttttttgttgggccgacactctttatgaaatatttta 11894351  T
Q  111 tatattttttgacatatggaagggtgtgtgagggaggtatgccacgtgagggtgt 165  Q
    |||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  11894352 tatattttttgacatatggaagggtgtgtgagggaggtatgctatatgagggtgt 11894406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 12413861 - 12413758
Alignment:
Q  224 tgaagttgcaattacatatgttatgcttaacttttgcattgtggaatcatatgaactatttcttgtaatttgactatgtcttttaatgtttaattgcctt 323  Q
    |||||||| | ||||||||||||| ||||||||| ||||| ||||||||||| |||||| ||||| ||||||| |||| ||  |||| |||||||  |||    
T  12413861 tgaagttgaagttacatatgttattcttaactttcgcattatggaatcatataaactatctcttgcaatttgattatgcctcctaatttttaattatctt 12413762  T
Q  324 cttg 327  Q
    ||||    
T  12413761 cttg 12413758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 12323586 - 12323665
Alignment:
Q  224 tgaagttgcaattacatatgttatgcttaacttttgcattgtggaatcatatga--actatttcttgtaatttgactatg 301  Q
    |||||||||| ||||||||||||| ||||||||||| ||| ||||||||||| |  ||||| ||||| ||||||| ||||    
T  12323586 tgaagttgcagttacatatgttattcttaacttttgtattatggaatcatataaacactatctcttgcaatttgattatg 12323665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 10039819 - 10039714
Alignment:
Q  80 gttgggctggcactctttatggaatattttatatattttttgacatatggaagggtgtgtgagggaggtatgccacgtgagggtgtgtgggtatcatcac 179  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  10039819 gttgggctggcattctttatggaatattttatatattttttgacatatggaagggtgtgtgagggaggtatgccacgtgagggagtgtgtgtatcatcac 10039720  T
Q  180 tctttt 185  Q
    ||||||    
T  10039719 tctttt 10039714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 10039874 - 10039832
Alignment:
Q  11 gagatggacatcacggtggagagagaacggtgacatccaattt 53  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  10039874 gagatagacataacggtggagagagaacggtgacatccaattt 10039832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 33846728 - 33846571
Alignment:
Q  11 gagatggacatcacggtggagagagaacggtgacatccaatttgaaaattcaatannnnnnnnnnnnnngttgggctggcactctttatggaatatttta 110  Q
    ||||| ||||| ||| |||||| |||||||||||||||||||| |||||||||||              |||||||||||||||||||||||||||||||    
T  33846728 gagatagacataacgatggagaaagaacggtgacatccaatttaaaaattcaatattttttatttttttgttgggctggcactctttatggaatatttta 33846629  T
Q  111 tatattttttgacatatggaagggtgtgtgagggaggtatgccacgtgagggtgtgtg 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33846628 tatattttttgacatatggaagggtgtgtgagggaggtatgccacgtgagggagtgtg 33846571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 17733027 - 17733094
Alignment:
Q  215 aaaatcacatgaagttgcaattacatatgttatgcttaacttttgcattgtggaatcatatgaactat 282  Q
    |||| ||| |||| || ||||||||||   |||||||||||||||| |||||||||||||||||||||    
T  17733027 aaaaacacttgaacttacaattacataacatatgcttaacttttgctttgtggaatcatatgaactat 17733094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 210 - 442
Target Start/End: Original strand, 3292225 - 3292458
Alignment:
Q  210 ccatcaaaatcacatgaagttgcaattacatatgttatgcttaacttttgcattgtggaatcatatgaactatttcttgtaatttgactatgtcttttaa 309  Q
    |||| |||||||| |||||||| | |||||||||||||||| ||||||||||||| | |||||||||| |||| ||||| ||||| |||||| ||  |||    
T  3292225 ccattaaaatcacttgaagttgtagttacatatgttatgctaaacttttgcattgggtaatcatatgatctatctcttgcaattttactatgcctcctaa 3292324  T
Q  310 tgtttaattgccttcttgcaggcacaacgaggtggaggatcaaat-gcttaaacattaatcaagaacaagactttcaaatgaagagacaaagatcttatg 408  Q
    |||||| ||| ||||||| ||  || || |||||| ||||||||| ||| |||| |||| |||||   ||||||| |||||| ||| || |||||||       
T  3292325 tgtttagttgacttcttgaagagaccactaggtggtggatcaaatggctcaaacgttaagcaagattgagactttaaaatgaggaggcagagatctttca 3292424  T
Q  409 cttagagttaactattgtcaacataaagtcgtga 442  Q
    ||| |||||| |||||||||||||||||| ||||    
T  3292425 cttcgagttatctattgtcaacataaagttgtga 3292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 2988452 - 2988600
Alignment:
Q  182 ttttgatatcgtgttgtctttatacgttccatcaaaatcacatgaagttgcaattacatatgttatgcttaacttttgcattgtggaatcatatgaacta 281  Q
    ||||||| | || |||||||||||| | ||||||||||| | |||||||| | |||||| |||||| |||||||||||||||||||||||||||||| ||    
T  2988452 ttttgatcttgtcttgtctttatacctcccatcaaaatctcttgaagttgtagttacatgtgttattcttaacttttgcattgtggaatcatatgaatta 2988551  T
Q  282 tttcttgtaatttgactatgtcttttaatgtttaattgccttcttgcag 330  Q
    | |||| |||||| | |||| || |||||||| ||||| ||||||||||    
T  2988552 tatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcag 2988600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 22322749 - 22322661
Alignment:
Q  210 ccatcaaaatcacatgaagttgcaattacatatgttatgcttaacttttgcattgtggaatcatatgaactatttcttgtaatttgactatg 301  Q
    ||||||||||||| ||||||||||||||    ||||||||||||||||| ||||||| ||||||||||  ||| ||||| ||||||| ||||    
T  22322749 ccatcaaaatcacttgaagttgcaattat---tgttatgcttaacttttacattgtgtaatcatatgatttatctcttgcaatttgattatg 22322661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 3125404 - 3125320
Alignment:
Q  244 ttatgcttaacttttgcattgtggaatcatatgaactatttcttgtaatttgactatgtcttttaatgtttaattgccttcttgc 328  Q
    ||||||||||||||| ||||||| |||||||||| |||| ||||| ||||||| |||| ||  |||| |||| ||| ||||||||    
T  3125404 ttatgcttaacttttacattgtgtaatcatatgatctatctcttgcaatttgattatgcctcctaatatttagttggcttcttgc 3125320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University