View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_10 (Length: 516)
Name: NF9029_low_10
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Complemental strand, 49464940 - 49464450
Alignment:
| Q |
18 |
atgtttacctttagtcatgttttctgataagcatgggccgtttggtccctaaactcaacttcgttggggaaaactgcttttaaaatttgagggatttaac |
117 |
Q |
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| T |
49464940 |
atgtttacctttagtcatgttttctgataagcatgggccgt--ggtccctaaactcaacttcgttggggaaaactgcttttaaaatttgagggatttaac |
49464843 |
T |
|
| Q |
118 |
attgatgttttcctattttgtatgactaaatatatttaaccgttgatttattatgttaacacttatgctataaatagaagaactactttggttggccttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49464842 |
attgatgttttcctattttgtatgactaaatatatttaaccgttgatttattatgttaacacttatgctataaatagaagaactactttggttggccttg |
49464743 |
T |
|
| Q |
218 |
caagttttc-attaaatatggtacaatcaggtttcctagattttattatttgttacatcacatggtatgtaatcatgatcaaaagtgcagtcacaaatca |
316 |
Q |
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| T |
49464742 |
caagttttctattaaatatggtacaatcaggtttcctagattttattatttgttacatcacatggtatgtaatcatgatcaaaagtgcagtcacaaatca |
49464643 |
T |
|
| Q |
317 |
tgttcatttgaattattttagccattgctgagttgattgcatatttccagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaa |
416 |
Q |
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| T |
49464642 |
tgttcatttgaattattttagccattgctgagttgattgcatatttccagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaa |
49464543 |
T |
|
| Q |
417 |
tctttgagttgttgtcagaggcactgggacttaactcttcttacctcaaagagttgaattgtgctgaaggactctttattttgggtctctgct |
509 |
Q |
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| T |
49464542 |
tctttgagttgttgtcagaggcactaggacttaactcttcttacctcaaagagttgaattgtgctgaaggactctttattttgggtcactgct |
49464450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 6e-66; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 304 - 503
Target Start/End: Original strand, 29463616 - 29463815
Alignment:
| Q |
304 |
cagtcacaaatcatgttcatttgaattattttagccattgctgagttgattgcatatttccagagatattgtgattgaatattcacagaaaataaaggag |
403 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||| ||||||||| | |
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| T |
29463616 |
cagttacaaatcatgttcatttgaattattttagtcattgatggattgattgcatacttgcagagatattgtgattgaatattcacaaaaaataaagaat |
29463715 |
T |
|
| Q |
404 |
ttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacctcaaagagttgaattgtgctgaaggactctttattttgggtc |
503 |
Q |
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| T |
29463716 |
ttgggtttcacaatctttgagttattgtcagaggcactaggacttaacccttcttacctaaaagagtttggttgtgctgaaggactctttactttgggtc |
29463815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 320 - 503
Target Start/End: Original strand, 19845841 - 19846024
Alignment:
| Q |
320 |
tcatttgaattattttagccattgctgagttgattgcatatttccagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatct |
419 |
Q |
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||||||||||| |||| |||| | |||||||| | |||| || ||||||||||||||||||||||||||||||||||| || || ||||||| ||||| |
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| T |
19845841 |
tcatttgaattgatttaaccatggttgagttgactacatacttgcagagatattgtgattgaatattcacagaaaataagtgatttaggtttcagaatct |
19845940 |
T |
|
| Q |
420 |
ttgagttgttgtcagaggcactgggacttaactcttcttacctcaaagagttgaattgtgctgaaggactctttattttgggtc |
503 |
Q |
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| T |
19845941 |
ttgagttgttgtcagaggcagtaggacttgatccttcttacttaaaagagttgaagtgtgctgaaggaatctatattatgggtc |
19846024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 364 - 496
Target Start/End: Original strand, 19890841 - 19890973
Alignment:
| Q |
364 |
cagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttacctc |
463 |
Q |
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|||||||| ||||||| ||||||| || ||||||| ||| |||||||||| |||||||||||| ||||| |||||||| |||||| | | ||||||| |
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| T |
19890841 |
cagagatagtgtgattaaatattcccaaaaaataagggatttgggtttcataatctttgagttattgtcggaggcactaggacttgatcgtgattacctc |
19890940 |
T |
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| Q |
464 |
aaagagttgaattgtgctgaaggactctttatt |
496 |
Q |
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| T |
19890941 |
aaagagttaaattgttgtgaaggactctttatt |
19890973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 29463438 - 29463516
Alignment:
| Q |
119 |
ttgatgttttcctattttgtatgactaaatatatttaaccgttgatttattatgttaacacttatgctataaatagaaga |
198 |
Q |
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| T |
29463438 |
ttgatgtttttctattttgtatgactgaatatatttgacccttgatttattatg-taactcttatgttataaatagaaga |
29463516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 266 - 503
Target Start/End: Original strand, 1093936 - 1094178
Alignment:
| Q |
266 |
ttgttacatcacatggtatgtaatcatgatcaaaagtgca-----gtcacaaatcatgttcatttgaattattttagccattgctgagttgattgcatat |
360 |
Q |
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||||||||||||||| ||| ||||||||| ||||||||| || ||||||||||| ||||||||||||| ||| || || || ||||||||||| |
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| T |
1093936 |
ttgttacatcacatgacatgcaatcatgataaaaagtgcatttcagtaacaaatcatgtacatttgaattattatagtcactgatggattgattgcatac |
1094035 |
T |
|
| Q |
361 |
ttccagagatattgtgattgaatattcacagaaaataaaggagttgggtttcacaatctttgagttgttgtcagaggcactgggacttaactcttcttac |
460 |
Q |
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| T |
1094036 |
ttgcagagatattgtgattgaatattcacaaaaaataaagaatttgggtttcaaaatctttgagttgttatcagaggcactaggatttaacccttcttac |
1094135 |
T |
|
| Q |
461 |
ctcaaagagttgaattgtgctgaaggactctttattttgggtc |
503 |
Q |
| |
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|| |||||||| |||||| |||||||| |||| |||||||| |
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| T |
1094136 |
cttaaagagtttggttgtgccgaaggactatttactttgggtc |
1094178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 1093841 - 1093889
Alignment:
| Q |
87 |
aaaactgcttttaaaatttgagggatttaacattgatgttttcctattt |
135 |
Q |
| |
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||||||| |||| ||||||||| ||||||||||||||||||| |||||| |
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| T |
1093841 |
aaaactggtttttaaatttgagagatttaacattgatgtttttctattt |
1093889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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