View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9029_low_11 (Length: 505)

Name: NF9029_low_11
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9029_low_11
NF9029_low_11
[»] chr5 (2 HSPs)
chr5 (15-487)||(40000578-40001050)
chr5 (28-81)||(22013364-22013417)
[»] chr8 (2 HSPs)
chr8 (28-81)||(25192403-25192456)
chr8 (28-68)||(4673481-4673521)
[»] chr6 (1 HSPs)
chr6 (28-81)||(3398569-3398622)
[»] chr2 (2 HSPs)
chr2 (15-55)||(1374648-1374688)
chr2 (28-81)||(20539730-20539783)
[»] chr7 (2 HSPs)
chr7 (28-69)||(5235948-5235989)
chr7 (28-81)||(27944991-27945044)
[»] chr1 (1 HSPs)
chr1 (28-68)||(48040518-48040558)


Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 487
Target Start/End: Original strand, 40000578 - 40001050
Alignment:
Q  15 aaattattaagaatgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtattcattcttcatagttacagacaattacaaataccctcttttcttat 114  Q
    |||||||||||| ||||||| |||||||||||||||||| ||| || ||||||| | | ||| |||||||||||||||||||||| ||||||||||||||    
T  40000578 aaattattaagagtgtcgacatgtcagtgtccgtgtcgtacccaatatccgtatccgtgctttatagttacagacaattacaaatgccctcttttcttat 40000677  T
Q  115 ttgaacatattgtcacactagttacatattaattttctttaatgaaagataactactactaattcaatgttgagttgtcatcaattactttgtgattaag 214  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40000678 ttgaacatattgtcacactagttacatat-aattttatttaatgaaaggtaactactactaattcaatgttgagttgtcatcaattactttgtgattaag 40000776  T
Q  215 caagttattcaatattaacaaccataattaaaagtgttaattttgttgtttatctactcatatatggtgggac-aaaaaatagaaaatgtcattatgcat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40000777 caagttattcaatattaacaaccataattaaaagtgttaattttgttgtttatctactcatatatggtgggacaaaaaaatagaaaatgtcattatgcat 40000876  T
Q  314 gagtggaggcctaccatgtgagattttcaaannnnnnngtatgatatcttgatatgtccaaacaatagaaaggatgaaaagatgaagatgaaaacaaggt 413  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40000877 gagtggaggcctaccatgtgagattttcaaaaaaatttgtatgatatcttgatatgtccaaacaatagaaaggatgaaaagatgaagatgaaaacaaggt 40000976  T
Q  414 ctgctctaaaatgtgaagacgcactacacactcaggtaggatgtccacacatttgcaataagattagatctttg 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40000977 ctgctctaaaatgtgaagacgcactacacactcaggtaggatgtccacacatttgcaataagattagatctttg 40001050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 22013417 - 22013364
Alignment:
Q  28 tgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtattcattcttcatag 81  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| | | ||||||||    
T  22013417 tgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 25192403 - 25192456
Alignment:
Q  28 tgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtattcattcttcatag 81  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||| | ||||||||    
T  25192403 tgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 4673481 - 4673521
Alignment:
Q  28 tgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtat 68  Q
    ||||| |||||||||||| |||||||| |||||||||||||    
T  4673481 tgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtat 4673521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 3398622 - 3398569
Alignment:
Q  28 tgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtattcattcttcatag 81  Q
    ||||| |||||||||||||||||||||  |||||||||||| ||| ||||||||    
T  3398622 tgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 1374648 - 1374688
Alignment:
Q  15 aaattattaagaatgtcgacgtgtcagtgtccgtgtcgtgc 55  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  1374648 aaattattaagaatgtcgacgtgtcagtgtctatgtcgtgc 1374688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 20539730 - 20539783
Alignment:
Q  28 tgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtattcattcttcatag 81  Q
    ||||||||||||||||||||||||||| ||  ||||||||| | | ||||||||    
T  20539730 tgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 5235989 - 5235948
Alignment:
Q  28 tgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtatt 69  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  5235989 tgtcgacgtgtcagtgtctgtgtcgtgtccaatgtccgtatt 5235948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 27945044 - 27944991
Alignment:
Q  28 tgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtattcattcttcatag 81  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| | | ||||||||    
T  27945044 tgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 48040518 - 48040558
Alignment:
Q  28 tgtcgacgtgtcagtgtccgtgtcgtgcccgatgtccgtat 68  Q
    ||||| ||||||||||||||||||||| ||| |||||||||    
T  48040518 tgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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