View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_12 (Length: 468)
Name: NF9029_low_12
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 22 - 459
Target Start/End: Original strand, 40381500 - 40381934
Alignment:
| Q |
22 |
catctttccttaaatgcagagggagcaagtaaaaaggacaaccctgcacagagctgatacaaaagctctctgtgtgaaacattaaaaattaaccaattat |
121 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
40381500 |
catctttccttgaatgcagagggagcaagtaaaaaggacaaccctgcacagagctgatacaaaagctctctgtg--aaacattaaaaattaatcaattat |
40381597 |
T |
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| Q |
122 |
aatgtggttttcaagatatgcaaaagtagtatcacaatcatatcatatatacttatttactgaatttggacttgtgaaacaacaagactaatttaattcc |
221 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40381598 |
aatgtgattttcaagatatgcaaa-gtagtatcacaatcatatcatatatacttatttactgaattcggacttgtgaaacaacaagactaatttaattcc |
40381696 |
T |
|
| Q |
222 |
cattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggacttattg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381697 |
cattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggacttattg |
40381796 |
T |
|
| Q |
322 |
gtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaacttccttcc |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
40381797 |
gtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatcttcaacttccttcc |
40381896 |
T |
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| Q |
422 |
ttgttcctctattcgcaactgtaattttctctgcttct |
459 |
Q |
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| T |
40381897 |
ttattcctctattcgcaactgtaattttctctgattct |
40381934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 120 - 450
Target Start/End: Original strand, 22812162 - 22812490
Alignment:
| Q |
120 |
ataatgtggttttcaagatatgcaaaagtagtatcacaatcatatcatatatactt--atttactgaatttggacttgtgaaacaacaagactaatttaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
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| T |
22812162 |
ataatgtggttttcaagatatgcaaaagtagtatcacactcatatcatatatacttttatttactgaatttggatttgtaaaacaacaagactaatttaa |
22812261 |
T |
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| Q |
218 |
ttcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggactt |
317 |
Q |
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| T |
22812262 |
ttcccattacaaaattgtat----ggtttggttttctgtcagttatgagtattgagaatgagacccttcaaaaatggtaacctcaatatctttaggacta |
22812357 |
T |
|
| Q |
318 |
attggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaacttcc |
417 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||| | ||||| | |
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| T |
22812358 |
attggtgtatcattgtttggtgtattgtccaaattttgagtgttcaattggcaagtactatttgtcttctgttgttggtcaaacatcatcttcaactgct |
22812457 |
T |
|
| Q |
418 |
ttccttgttcctctattcgcaactgtaattttc |
450 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
22812458 |
ttccttgttcctctattcgcaactgtaattttc |
22812490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 281 - 403
Target Start/End: Original strand, 22809496 - 22809618
Alignment:
| Q |
281 |
cccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactactt |
380 |
Q |
| |
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|||||||||||| | || |||| |||||||||| || ||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
22809496 |
cccttcaaaaattgaaatctcagtatctttaggcctgtttggtttatcattgtttgatgtaatgtccaaattccgagtgttcatttggccactactactt |
22809595 |
T |
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| Q |
381 |
gtcttctgatgttggtcaaacat |
403 |
Q |
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||||||| |||||||||||||| |
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| T |
22809596 |
ctcttctgctgttggtcaaacat |
22809618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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