View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9029_low_14 (Length: 431)
Name: NF9029_low_14
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 47 - 412
Target Start/End: Original strand, 11884145 - 11884510
Alignment:
| Q |
47 |
aagagcttaagcattgatacataacaagaccaatccatatcctaatcacaatcctactttcactaaatactttcacttaagtgtggtcttggaaaggaca |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11884145 |
aagagcttaagcattgatacataacaagaccaatccatatcctaatcacaatcctactttcactaaatactttcacttaagtgtggtcttggaaaggaca |
11884244 |
T |
|
| Q |
147 |
aatgaagaaagacattccagaggtatggtaagggacaatatctgcagttatgcacatattgcaggattgtgaggaactaccggactgatttgattcacca |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11884245 |
aatgaagaaagacattccagaggtatggtaagggacaatatctgcagttatgcacatattgcaagattgtgaggaactaccggactgatttgattcacca |
11884344 |
T |
|
| Q |
247 |
aaaaatttggaacaaatatttcagcccagaactcagacaatgactggattggaacctttcagcttctaatatcggtactgtccaaggaaatagtcattct |
346 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11884345 |
aaaaatttggaataaatatttcagcccagaactcagacaatgactggattggaacctttcagcttctaatatcggtactgtccaaggaaatagtcattct |
11884444 |
T |
|
| Q |
347 |
ctttttggagtagctgtgaatgatttatggaaagatagaactaagctggtcttttctagaaacacc |
412 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11884445 |
ctttttggagtagctgtgaaggatttatggaaagatagaactaagctggtcttttctagaaacacc |
11884510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University