View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_16 (Length: 404)
Name: NF9029_low_16
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 34588600 - 34588868
Alignment:
| Q |
8 |
ttggtgtttataggctagagaggtacatacccttgaagttcaacattattgtctatgttccctctaataacacaccaagcttatatcaactggtagttgt |
107 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
34588600 |
ttggtgtttataggctagagaggtacagacccttgaagttcaacattattgtctatgttccctctaataacacaccaagcttatatcaaccggtagctgt |
34588699 |
T |
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| Q |
108 |
ggcctgttggcaatgtgtattgaaggattaa----nnnnnnnnaacgg-ttaggcttataaaaaatcaagaagcacattctttgataattggatagctag |
202 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34588700 |
ggcctgttggcaatgtgtattgaaggattaattttttttttttaacggtttagacttataaaaaatcaagaagcacattctttgataattgaatagctaa |
34588799 |
T |
|
| Q |
203 |
ggaaagagattgcaaatattaggagaaaactgaaggaaggacattttatgtttcaagtaagggaatgag |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34588800 |
ggaaagagattgcaaatattaggagaaaactgaaggaagaacattttatgtttcaagtaagggaatgag |
34588868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 34588932 - 34588986
Alignment:
| Q |
335 |
aagtgaattgatgcataatgatgatgttggtgcatgcatcaacaacctaacttct |
389 |
Q |
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| T |
34588932 |
aagtgaatggatgcataatgatgatgttggtgcatgcatcagcaacctaacttct |
34588986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 35409169 - 35409437
Alignment:
| Q |
8 |
ttggtgtttataggctagagaggtacatacccttgaagttcaacattattgtctatgttccctctaataacacaccaagcttatatcaactggtagttgt |
107 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
35409169 |
ttggtgtttataggctagagaggtacagaccattgaagttcaacattattgtctatgttccctctaataacacaccaagcttatatcaaccggtagctgt |
35409268 |
T |
|
| Q |
108 |
ggcctgttggcaatgtgtattgaaggattaa----nnnnnnnnaacgg-ttaggcttataaaaaatcaagaagcacattctttgataattggatagctag |
202 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35409269 |
ggcctgttggcaatgtgtattgaaggattaattttttttttttaacggtttagacttataaaaaatcaagaagcacattctttgataattgaatagctaa |
35409368 |
T |
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| Q |
203 |
ggaaagagattgcaaatattaggagaaaactgaaggaaggacattttatgtttcaagtaagggaatgag |
271 |
Q |
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| T |
35409369 |
ggaaagagattgcaaatattaggagaaaactgaaggaagaacattttatgtttcaagtaagggaatgag |
35409437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 618635 - 618434
Alignment:
| Q |
8 |
ttggtgtttataggctagagaggtacatacccttgaagttcaacattattgtctatgttccctctaataacacaccaagcttatatcaactggtagttgt |
107 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
618635 |
ttggtgtttataggctagagaggtacagacccttgaagttcaacattattgtctatgttccctctaataacacaccaagcttatatcaaccggtagctgt |
618536 |
T |
|
| Q |
108 |
ggcctgttggcaatgtgtattgaagga--ttaannnnnnnnaacgg-ttaggcttataaaaaatcaagaagcacattctttgataattggatagctaggg |
204 |
Q |
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||||||||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
618535 |
ggcctgttggcaatgtgtattgaaggattttttttttttttaacggtttagacttataaaaaatcaagaagcacattctttgataattgaatagctaagg |
618436 |
T |
|
| Q |
205 |
aa |
206 |
Q |
| |
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|| |
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| T |
618435 |
aa |
618434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 618273 - 618205
Alignment:
| Q |
203 |
ggaaagagattgcaaatattaggagaaaactgaaggaaggacattttatgtttcaagtaagggaatgag |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
618273 |
ggaaagagattgcaaatattaggagaaaactgaaggaagaacattttatgtttcaagtaagggaatgag |
618205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 35409501 - 35409555
Alignment:
| Q |
335 |
aagtgaattgatgcataatgatgatgttggtgcatgcatcaacaacctaacttct |
389 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35409501 |
aagtgaatggatgcataatgatgatgttggtgcatgcatcagcaacctaacttct |
35409555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 25100617 - 25100765
Alignment:
| Q |
63 |
tgttccctctaataacacaccaagcttatatcaactggtagttgtggcctgttggcaatgtgtattgaaggatt-aannnnnnnnaacggttaggcttat |
161 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||| || | || |||||||||||| || ||||||||| ||||| |
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| T |
25100617 |
tgttccctctaacaacacaccaagcttatatcaactggtagatgtggcctgtgggtagtgcatattgaaggattcaaaaattgttaacggttagacttat |
25100716 |
T |
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| Q |
162 |
aaaaaatcaagaagcacattctttgataattggatagctagggaaagaga |
211 |
Q |
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|||||||||||||||||||||||||||||| |||| ||| ||||||||| |
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| T |
25100717 |
-aaaaatcaagaagcacattctttgataattagataactaaggaaagaga |
25100765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 27299296 - 27299350
Alignment:
| Q |
335 |
aagtgaattgatgcataatgatgatgttggtgcatgcatcaacaacctaacttct |
389 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||| |
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|
| T |
27299296 |
aagtgaatggatgcataatgatgaggttggtggatgcatcagcaacctaacttct |
27299350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 25100544 - 25100594
Alignment:
| Q |
8 |
ttggtgtttataggctagagaggtacatacccttgaagttcaacattattg |
58 |
Q |
| |
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||||||| |||||||||||||||| || ||||||||| ||||||||||||| |
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|
| T |
25100544 |
ttggtgtctataggctagagaggtgcagacccttgaaattcaacattattg |
25100594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 28177690 - 28177744
Alignment:
| Q |
335 |
aagtgaattgatgcataatgatgatgttggtgcatgcatcaacaacctaacttct |
389 |
Q |
| |
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|||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||| |
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| T |
28177690 |
aagtgaatggatgcataatgatgaggttggtggatgcatcagcaacctaacttct |
28177744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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