View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_17 (Length: 389)
Name: NF9029_low_17
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 13608674 - 13608867
Alignment:
| Q |
1 |
ccaatctctctggttgggatatgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagtttactaacaaaactttacct |
100 |
Q |
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| T |
13608674 |
ccaatctctctggttgggatatgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagtttactaacaaaactttacct |
13608773 |
T |
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| Q |
101 |
gtttcattgaacgaataattttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatttgatgtttactgtcatga |
194 |
Q |
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| T |
13608774 |
gtttcattgaacgaataattttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatttgatgtttactgtcatga |
13608867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 252 - 369
Target Start/End: Original strand, 13608925 - 13609042
Alignment:
| Q |
252 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
351 |
Q |
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| T |
13608925 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
13609024 |
T |
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| Q |
352 |
acttcaactttacctggc |
369 |
Q |
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| T |
13609025 |
acttcaactttacctggc |
13609042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 254 - 366
Target Start/End: Original strand, 31244876 - 31244988
Alignment:
| Q |
254 |
tgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaaac |
353 |
Q |
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| T |
31244876 |
tgtgatgatttggtatttctatcctctggtcttttaggccacaatatgcagagattggaaaaattattaaagaggtaacatgcttattgagtcacaaatc |
31244975 |
T |
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| Q |
354 |
ttcaactttacct |
366 |
Q |
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||||||||||||| |
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| T |
31244976 |
ttcaactttacct |
31244988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 252 - 368
Target Start/End: Complemental strand, 6472799 - 6472683
Alignment:
| Q |
252 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
351 |
Q |
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|||||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||| |||||||||||||||| ||| | ||||||||||||| || |
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| T |
6472799 |
catgtgatgatttggaatttctattctctggtcttttaggtcacaatatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaataag |
6472700 |
T |
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| Q |
352 |
acttcaactttacctgg |
368 |
Q |
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| T |
6472699 |
actgaaactttaactgg |
6472683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6472974 - 6472890
Alignment:
| Q |
1 |
ccaatctctctggttgggatatgaaggataagtaagtagtattttctctgtttgccacaag--ctgatcaacacttttaagttta |
83 |
Q |
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| T |
6472974 |
ccaatctctctggttgggatataaaggataagtaagtagtattttctatgtttgccgcaagttgtgatcaacacttttaagttta |
6472890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 17599673 - 17599600
Alignment:
| Q |
10 |
ctggttgggatatgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagttta |
83 |
Q |
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|||| ||| |||| |||||| ||||||| ||||||||| |||| || ||||| | ||||||||||||||||||| |
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| T |
17599673 |
ctggctggaatataaaggatcagtaagttgtattttctatgttagcaacaagataatcaacacttttaagttta |
17599600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 14724177 - 14724250
Alignment:
| Q |
10 |
ctggttgggatatgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagttta |
83 |
Q |
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|||| ||| |||| |||||| ||||||| ||||||||| |||| || ||||| | |||||| |||||||||||| |
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| T |
14724177 |
ctggctggaatataaaggatcagtaagttgtattttctatgttagcaacaagataatcaacgcttttaagttta |
14724250 |
T |
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