View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_20 (Length: 333)
Name: NF9029_low_20
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 38263748 - 38263462
Alignment:
| Q |
18 |
gattcgatcttcaccccgtcggaattgcgataggactgactatgcctacgggcgccaaagaaaaatccaaaacaatcaccagaacgaacgctgttttgga |
117 |
Q |
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| T |
38263748 |
gattcgatcttcaccccgtcggaattgcaatagt------tatgcctacgggcgccaaagaaaaatccaaaacaatcaccagaacgaacgctgttttgga |
38263655 |
T |
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| Q |
118 |
gtttattatttgtttattttgagtagcttatttccatcacacttttgtttaatagttctataattaacttctggatgatgtttcttcgatatcatgctaa |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38263654 |
gtttattatttgtttattttgaggagcttatttccatcgcacttttgtttaatagttctataattaa----------------cttcgatatcatgctaa |
38263571 |
T |
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| Q |
218 |
taattatgatcccatttgatatcaaataaaaaataattataagattatttcttaatgtaataaagcgtatcattttcaactaaattatttttgtactttg |
317 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38263570 |
taattatgatcccgtttgatatcaaataaaaaataattataagattatttcttaatgtaataaagcgtatcattttcaactaaattattcttgtactttg |
38263471 |
T |
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