View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_22 (Length: 309)
Name: NF9029_low_22
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_22 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 9303518 - 9303418
Alignment:
| Q |
209 |
cgtaaccaaatcaaaaccaagaccacataacatcaaaaatcaccatcacgaacaacatcaccaaaaccagtcaaccaaccacacaaagcaataacaccaa |
308 |
Q |
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| T |
9303518 |
cgtaaccaaatcaaaaccaagaccacataacatcaaaaatcaccatcacgaacatcaccaccaaaaccagtcaaccaaccacacaaagcaataacatcaa |
9303419 |
T |
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| Q |
309 |
a |
309 |
Q |
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| T |
9303418 |
a |
9303418 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 9303712 - 9303619
Alignment:
| Q |
4 |
gagatggacatcaagaaaaaacacaaggaaagctgccaaattttgcatcaa-cctaattccaaaccttgtctgataccatcataaaccagtaat |
96 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9303712 |
gagaaggacatcaagaaaaaacacaaggaaagctgccaaattttgcatcaaccctaattccaaaccttgtctgataccatcataaaccagtaat |
9303619 |
T |
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