View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_26 (Length: 221)
Name: NF9029_low_26
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 2715472 - 2715281
Alignment:
| Q |
14 |
attattctactcagtaaattatttttgtgattcttaattcttgtaacagaaaactttattcacatttaaattaaaaggggaaggaatacacaaaaagaaa |
113 |
Q |
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| T |
2715472 |
attattctactcagtaaattatttttgtgattcttaattcttgtaacagaaacctttattcacatttaaattaaaaggggaaggaatacacaaaaagaaa |
2715373 |
T |
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| Q |
114 |
taggggaaaatataggtgtgaaaataatgacatgggtcctattccaacttcaaccaacagaatttaatgagaagtaaatagacattcatatt |
205 |
Q |
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| T |
2715372 |
taggtgaaaatataggtgtgaaaataatgacatgggtcctattccaacttcaaccaacaaaatttaatgagaagtaaatagacattcatatt |
2715281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 2710631 - 2710461
Alignment:
| Q |
17 |
attctactcagtaaattatttttgtg---attcttaattcttgtaacagaaaactttattcacatttaaattaaaaggggaaggaatacacaaaaagaaa |
113 |
Q |
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| T |
2710631 |
attctactcactaaattattattctggcgattctgaattcttgtaaaggaaacctttattgacatttaaattgaaaggggaaagagtacaccaaaag--- |
2710535 |
T |
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| Q |
114 |
taggggaaaatataggtgtgaaaataatgacatgggtcctattccaacttcaaccaacagaatttaatgagaagtaaatag |
194 |
Q |
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| T |
2710534 |
-------aaatataggtgtgaaaataatgatgtgggtcctattccaacttgcacctgcaaaagttgatgagaagtaaatag |
2710461 |
T |
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