View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_3 (Length: 657)
Name: NF9029_low_3
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 245 - 642
Target Start/End: Complemental strand, 11586228 - 11585831
Alignment:
| Q |
245 |
attaagttataatgtttatttttaaaagaccaaagaatgctaattaagaaaaactgaaaaagagaaaccccacggctctcctttcacactggaccaacca |
344 |
Q |
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| T |
11586228 |
attaagttataatgtttatttttaaaagaccaaagaatgctaattaagaaaaactgaaaaagagaaaccccacggctctcctttcacactggatcaacca |
11586129 |
T |
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| Q |
345 |
gtcaaaacttagttattcaaatatgtgccttcctcatatctgacaaaaagtccttcaatatttagtagagaacattagttcaactaatctactattatta |
444 |
Q |
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| T |
11586128 |
gtcaaaacttagttattcaaatatgtgccttcctcatatctgacaaaaagtccttcaatatttagtagagaacattatttcaactaatctactatgatta |
11586029 |
T |
|
| Q |
445 |
gccttacttttcaatacattctgccactaattgctaagtaaaaatggttataaaacataaatagaattgttttcgtctatcatgatatgaaggggtaatg |
544 |
Q |
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| T |
11586028 |
gccttacttttcaacacattctgccactaattgctaagtaaaaatggttataaaacataaatagaattgttttcgtctatcatgatatgaagaggtaatg |
11585929 |
T |
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| Q |
545 |
taaataaataccatttggagaatgtatgctgagttgaattggaatgtttgaaattgcctttgacttcccagttatacgatctgtttcatctgaaattt |
642 |
Q |
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| T |
11585928 |
taaataaataccatttggagaatgtatgctgagttgaattggaatgtttgaaattgcctttgacttcccagttatacgatctgtttcatctgaaattt |
11585831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 11586750 - 11586515
Alignment:
| Q |
18 |
aaaggctcctatataaattgacattttcattcccaatctatacatccatctcccacacttgactgacttgattgtcaaagtatctgcaagtggccaccac |
117 |
Q |
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| T |
11586750 |
aaaggctcctatataaattgacattttcattcccaatctatacatccatctcccacacttgactgacttgattgtcaaagtatctgcaagtggccaccac |
11586651 |
T |
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| Q |
118 |
caggaactcccccaattgtgatctatctcagcgatcaatcagttcaacgtttatctattcgaacatatcaatgagcttttctcatctctttcatccttaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11586650 |
caggaactcccccaattgtgatctatctcagcgatcaatctgttcaacgtttatctattcgaacatatcaatgagcttttctcatctctttcatccttaa |
11586551 |
T |
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| Q |
218 |
atttctccatagagtagcttcttacaaattaagtta |
253 |
Q |
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| T |
11586550 |
agttcgccatagagtagcttcttacaaattaagtta |
11586515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 552 - 636
Target Start/End: Complemental strand, 44530514 - 44530430
Alignment:
| Q |
552 |
ataccatttggagaatgtatgctgagttgaattggaatgtttgaaattgcctttgacttcccagttatacgatctgtttcatctg |
636 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
44530514 |
ataccatttggagaataaatgctgagttgaataggaatgtttgaaatttgctttgacttcccagttattcgatctgtttcatctg |
44530430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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