View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9029_low_4 (Length: 620)
Name: NF9029_low_4
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_4 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr1 (13 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 7 - 620
Target Start/End: Complemental strand, 1847349 - 1846736
Alignment:
| Q |
7 |
attacttcttctgtcctaagtagcttttcctattatattatgtgaaatgttaatatgtgcccaagtcatgttaaacatctacaagtagaaattatgcatc |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847349 |
attacttcttccgtcctaagtagcttttcctattatattatgtgaaatgttaatatgtgcccaagtcatgttaaacatctacaagtagaaattatgcatc |
1847250 |
T |
|
| Q |
107 |
cgaaaatgtgctaannnnnnngtcaaaggttgaaaattattattatattgaataaaatgttttctatttatggaattcttaacatataccatgtgaaata |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847249 |
cgaaaatgtgctaatttttttgtcaaaggttgaaaattattat---attgaataaaatattttctatttatggaattcttaacatataccatgtgaaata |
1847153 |
T |
|
| Q |
207 |
cttaaggacatcacaatcgatgatactcacacacatactattatgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaggtttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1847152 |
cttaaggacatcacaatcgatgatactcacacacatactattatgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaagtttc |
1847053 |
T |
|
| Q |
307 |
ctattaacattctgtttattggt---catgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcat |
403 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1847052 |
ctattaacattctgtttattggtggtcatgtcgactccgggaagtcaacgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcat |
1846953 |
T |
|
| Q |
404 |
cgagagatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcaca |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1846952 |
cgagagatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcaca |
1846853 |
T |
|
| Q |
504 |
attgacatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggag |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1846852 |
attgacatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggag |
1846753 |
T |
|
| Q |
604 |
catccgaagctgactgt |
620 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1846752 |
catccgaagctgactgt |
1846736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 308 - 620
Target Start/End: Complemental strand, 4620346 - 4620034
Alignment:
| Q |
308 |
tattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgag |
407 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
4620346 |
tattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattaaaaaggatgtcattgag |
4620247 |
T |
|
| Q |
408 |
agatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattg |
507 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
4620246 |
cgatttgagaaagaagccgctgagataaacatgtgttcattcaaatatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaatcg |
4620147 |
T |
|
| Q |
508 |
acatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatc |
607 |
Q |
| |
|
|||||||||| | ||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
4620146 |
acatttctctgtccaagtttgagacaaccaagtactactgcactctcattgatgcccccggacacagagatttcattaagaacatgatcaccggaacatc |
4620047 |
T |
|
| Q |
608 |
cgaagctgactgt |
620 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
4620046 |
ccaagctgactgt |
4620034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 308 - 597
Target Start/End: Original strand, 4787139 - 4787428
Alignment:
| Q |
308 |
tattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgag |
407 |
Q |
| |
|
|||||||||| || |||||||||| | | |||||||||||||| | || ||| ||||||| |||||||||||||||| |||| |||||||||||| ||| |
|
|
| T |
4787139 |
tattaacattgtggttattggtcaagccaactccgggaagtcaaccaccactgctcatttgctctacaagcttggaggcattggaaaggatgtcattgag |
4787238 |
T |
|
| Q |
408 |
agatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattg |
507 |
Q |
| |
|
||| |||||||||||||| |||| ||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
4787239 |
agacttgagaaagaagcttatgaggctaactggccttcattcaagtatgcttgggtgcttgacaaactcaagggtgagcgtgaaagaggtgccacaattg |
4787338 |
T |
|
| Q |
508 |
acatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatca |
597 |
Q |
| |
|
|||||||| | | ||||||||||||| ||| | | ||||||| |||||||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
4787339 |
acatttctatgtccaagtttgagacaaacaagtacaactgcactgtcattgatgctcccggacacagggaatacattaggaacatgatca |
4787428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 308 - 604
Target Start/End: Complemental strand, 4298129 - 4297833
Alignment:
| Q |
308 |
tattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgag |
407 |
Q |
| |
|
|||||||||| || ||||||| |||| | |||||||||||||| | || ||| ||||||| ||||||| || ||||| ||||||||||||||||| ||| |
|
|
| T |
4298129 |
tattaacattgtggttattggccatgccaactccgggaagtcaaccactactgctcatttgctctacaaactcggaggcattgaaaaggatgtcattgag |
4298030 |
T |
|
| Q |
408 |
agatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattg |
507 |
Q |
| |
|
||| ||||||||| || || |||| | |||| || ||| ||||||||||||||||| |||||||| ||||| || || | |||||||||| |||||||| |
|
|
| T |
4298029 |
agacttgagaaagtagatgttgaggttaacatgccttcgttcaagtatgcttgggtacttgacaaactcaaagctgaccatgaaagaggtgccacaattg |
4297930 |
T |
|
| Q |
508 |
acatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagc |
604 |
Q |
| |
|
|||||||||| | ||||||||||||| ||| | | ||||| | ||||||||||||||||||| ||||| | |||||||||||||| ||| ||||| |
|
|
| T |
4297929 |
acatttctctgtccaagtttgagacaaacaagtacaactgcattgtcattgatgcccccggacatagggaatgcattaagaacatgaccactggagc |
4297833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 270 - 620
Target Start/End: Original strand, 7890635 - 7890985
Alignment:
| Q |
270 |
attcaagttgaaggactgatgagtaggggaaggtttcctattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttga |
369 |
Q |
| |
|
||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7890635 |
attcaagtttaaggaccaatgagtaggccaaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttga |
7890734 |
T |
|
| Q |
370 |
tctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7890735 |
tctacaagcttggaggtattgaaaaggatgtcatcgatagatttgagaaagaagctgctgagatgaacaggcattcattcaagtatgcttgggtgcttga |
7890834 |
T |
|
| Q |
470 |
caagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccgga |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
7890835 |
caagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctgtggaagtttgagacaaccaacttccgctgcactctcattgatgcccctgga |
7890934 |
T |
|
| Q |
570 |
cacagggatttcattaagaacatgatcaccggagcatccgaagctgactgt |
620 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7890935 |
cacagggatttcattaagaacatgatcactggagcgtccgaagctgactgt |
7890985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 250 - 616
Target Start/End: Original strand, 7888338 - 7888716
Alignment:
| Q |
250 |
tgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaggtttcc------------tattaacattctgtttattggtcatgtcga |
337 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||| | ||||| ||||||||||||||||||| || |
|
|
| T |
7888338 |
tgtgttgaatttgcagattcattcaagtttaaggactaatgagtaggccaaagtttccgcccccggttcctcttaactttctgtttattggtcatgttga |
7888437 |
T |
|
| Q |
338 |
ctccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaagctgctgagataaac |
437 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
7888438 |
ttccgggaagtcaaccactgctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagaaacttgagaaagaagctgctgagataaac |
7888537 |
T |
|
| Q |
438 |
aggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaagtttgagacaacca |
537 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
7888538 |
agacgtttattcaagtatgcttgggtgcttgacaaactcaaggctgagcgtgaaagaggtatcacaattgacatttctctttggaagtttcagacaacca |
7888637 |
T |
|
| Q |
538 |
acttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaagctga |
616 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||| |
|
|
| T |
7888638 |
gctactgctgcactctcattgatgcccccggacacagggatttcatcaagaacatgatcaccggggcgtctgaagctga |
7888716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 308 - 620
Target Start/End: Original strand, 38137489 - 38137801
Alignment:
| Q |
308 |
tattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgag |
407 |
Q |
| |
|
||||||| || || ||||||||||||| ||||| ||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
38137489 |
tattaacgttgtggttattggtcatgttgactctgggaagtcaactactgctggtcatttgatctacaaacttggaggtattgaaaaggatgtcattgag |
38137588 |
T |
|
| Q |
408 |
agatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattg |
507 |
Q |
| |
|
||| |||||||||||||| |||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38137589 |
agacttgagaaagaagctactgagataaacaagccatcgttcaagtatgcttgggtgctcgacaagctcaaggccgagcgtgaaagaggtatcactattg |
38137688 |
T |
|
| Q |
508 |
acatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatc |
607 |
Q |
| |
|
|||||||||| | ||||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
38137689 |
acatttctctgtcaaagtttgagactaccaagtactactgcactctcattgatgcccccggacacagggatttcattaagaacatgattaccgggacgtc |
38137788 |
T |
|
| Q |
608 |
cgaagctgactgt |
620 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
38137789 |
ccaagctgactgt |
38137801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 324 - 616
Target Start/End: Complemental strand, 43046087 - 43045795
Alignment:
| Q |
324 |
attggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaag |
423 |
Q |
| |
|
||||| ||||||||||| ||||| ||| | || ||||||| |||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||| |
|
|
| T |
43046087 |
attggccatgtcgactctgggaaatcaaccaccactggtcacttgatctacaagcttggaggtattgacaagcgtgtcattgagaggtttgagaaagaag |
43045988 |
T |
|
| Q |
424 |
ctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaa |
523 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
43045987 |
ctgctgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaa |
43045888 |
T |
|
| Q |
524 |
gtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaagctga |
616 |
Q |
| |
|
||||||||||||||| | | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
43045887 |
gtttgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctga |
43045795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 324 - 616
Target Start/End: Complemental strand, 3301370 - 3301078
Alignment:
| Q |
324 |
attggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaag |
423 |
Q |
| |
|
||||||||||||||||||||||||||| | || | ||||| |||||||||||||||||||||||||| ||| ||| || ||||| ||||||||||||| |
|
|
| T |
3301370 |
attggtcatgtcgactccgggaagtcaaccaccaccggtcacttgatctacaagcttggaggtattgacaagcgtgtgattgagaggtttgagaaagaag |
3301271 |
T |
|
| Q |
424 |
ctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaa |
523 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
3301270 |
ctgctgagatgaacaagcgttcattcaagtatgcttgggtgctcgacaagctcaaggctgaatgtgaaagaggtatcacaattgacattgctctgtggaa |
3301171 |
T |
|
| Q |
524 |
gtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaagctga |
616 |
Q |
| |
|
||||||||| || || | | ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||||| |
|
|
| T |
3301170 |
gtttgagactactaagtactactgcactgtcattgatgcccccggacacagggatttcattaagaacatgattactggaacatcccaagctga |
3301078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 324 - 616
Target Start/End: Complemental strand, 43084515 - 43084223
Alignment:
| Q |
324 |
attggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaag |
423 |
Q |
| |
|
||||| ||||| ||||| ||||| ||| | || ||||||| |||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||| |
|
|
| T |
43084515 |
attggccatgttgactctgggaaatcaaccacaactggtcacttgatctacaagcttggaggtattgacaagcgtgtcatagagaggtttgagaaagaag |
43084416 |
T |
|
| Q |
424 |
ctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaa |
523 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
43084415 |
ctgctgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaa |
43084316 |
T |
|
| Q |
524 |
gtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaagctga |
616 |
Q |
| |
|
||||||||||||||| | | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
43084315 |
gtttgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctga |
43084223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 271 - 601
Target Start/End: Original strand, 45993084 - 45993414
Alignment:
| Q |
271 |
ttcaagttgaaggactgatgagtaggggaaggtttcctattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgat |
370 |
Q |
| |
|
|||||||| ||||||| ||| || || || | ||||||||| |||| || ||||||||||||||||||||||||||||| | || |||||||||| || |
|
|
| T |
45993084 |
ttcaagtttaaggactaatggataaggaaaaggttcctattagcattgtggttattggtcatgtcgactccgggaagtcaaccactactggtcatttcat |
45993183 |
T |
|
| Q |
371 |
ctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgac |
470 |
Q |
| |
|
| |||| |||||| ||||| | ||| |||||||||||| |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
45993184 |
ccacaaacttggatgtattcacaagagtgtcatcgagagtcttgagaaagaagctgctgagatgatcaagcgttcattcaagtatgcttgggtgcttgac |
45993283 |
T |
|
| Q |
471 |
aagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggac |
570 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||| |||| | | |||||||||||||| ||| | | ||||||| ||||||||||| |||||| |
|
|
| T |
45993284 |
aagctcaagactgagcgtgaaagaggtatcacaattgacagttctttgtcgaagtttgagacaaacaagtacagctgcactgtcattgatgcctccggac |
45993383 |
T |
|
| Q |
571 |
acagggatttcattaagaacatgatcaccgg |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45993384 |
acagggatttcattaagaacatgatcaccgg |
45993414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 324 - 616
Target Start/End: Original strand, 43066320 - 43066612
Alignment:
| Q |
324 |
attggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaag |
423 |
Q |
| |
|
||||| ||||||||||| || |||||| | || ||||||| || |||||||| |||||||||||||| ||| |||||| ||||| ||||||||||||| |
|
|
| T |
43066320 |
attggccatgtcgactctggcaagtcaaccaccactggtcacttaatctacaaacttggaggtattgacaagcgtgtcattgagaggtttgagaaagaag |
43066419 |
T |
|
| Q |
424 |
ctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaa |
523 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
43066420 |
ctgctgagatgaacaagcgttcattcaagtatgcctgggttcttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaa |
43066519 |
T |
|
| Q |
524 |
gtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaagctga |
616 |
Q |
| |
|
||||||||||||||| | | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
43066520 |
gtttgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctga |
43066612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 308 - 620
Target Start/End: Original strand, 45983341 - 45983653
Alignment:
| Q |
308 |
tattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgag |
407 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||||||||||| | || |||||||||||||| |||| |||||| ||||| | ||| |||||| ||| |
|
|
| T |
45983341 |
tattaacattgtggttattggtcatgtggactccgggaagtcaaccactactggtcatttgatccacaaacttggatgtattcacaagagtgtcattgag |
45983440 |
T |
|
| Q |
408 |
agatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattg |
507 |
Q |
| |
|
|| ||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||| |
|
|
| T |
45983441 |
agtcttgagaaagaagctgctaagatgaacaagcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgaacgtgaaagaggtgttacaattg |
45983540 |
T |
|
| Q |
508 |
acatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatc |
607 |
Q |
| |
|
||||| | || | |||||||||||||| ||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
45983541 |
acattaccctgtcgaagtttgagacaaacaagtacaactgcactgtcattgatgcccccggacacagggatttcattaagaacatgatcaccggaacgtc |
45983640 |
T |
|
| Q |
608 |
cgaagctgactgt |
620 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
45983641 |
ccaagctgactgt |
45983653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 308 - 601
Target Start/End: Complemental strand, 51292271 - 51291979
Alignment:
| Q |
308 |
tattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgag |
407 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| |
|
|
| T |
51292271 |
tattaacattgtgtttattggtcatgtcgactatggaaagtcaaatactgctggtcatttgatctacaagcttggaggtattgacaagaatgacattgag |
51292172 |
T |
|
| Q |
408 |
agatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattg |
507 |
Q |
| |
|
||| |||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
51292171 |
agacttgagaaagaagctactgagatgaacatgcgttcattcacgtatgcttgggtgcttgacaagttcaaggctgagcgtgaaagaggtatcacaattg |
51292072 |
T |
|
| Q |
508 |
acatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccgg |
601 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| | | |||||||||||||||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
51292071 |
acatttctctatccaagtttga-acaatcaagtactattgcactctcattgatgcccccggacatgggaatttcattaagaacatgatcgccgg |
51291979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 308 - 593
Target Start/End: Original strand, 40034329 - 40034612
Alignment:
| Q |
308 |
tattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgag |
407 |
Q |
| |
|
||||||||| | ||||||||| |||||||||| ||||||||| | || | |||||||||||||||||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
40034329 |
tattaacatcgtatttattggtaatgtcgactctgggaagtcaaccactggtggtcatttgatctacaagcttggcggtattaaaaaggatgtcattgag |
40034428 |
T |
|
| Q |
408 |
agatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattg |
507 |
Q |
| |
|
| |||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
40034429 |
aaatttgagaaagaagctgctgagatgaacaagcgctcattcaagtatgcttgggtacttgacaagctcaaggctgagcgtgaaagaggtgttacaattg |
40034528 |
T |
|
| Q |
508 |
acatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatg |
593 |
Q |
| |
|
| ||||| | | ||||||||||||||||| | || ||||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
40034529 |
atatttccatgtccaagtttgagacaaccaaataccactgcactctcattgacgcccccggacaca--gatttcatcaagaacatg |
40034612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 382 - 616
Target Start/End: Complemental strand, 43045576 - 43045342
Alignment:
| Q |
382 |
gaggtattgaaaaggatgtcatcgagagatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggc |
481 |
Q |
| |
|
|||||||||| ||| |||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
43045576 |
gaggtattgacaagcgtgtcattgagaggtttgagaaagaagctgctgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggc |
43045477 |
T |
|
| Q |
482 |
cgagcgtgaaagaggtatcacaattgacatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttc |
581 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||| | | ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
43045476 |
tgaacgtgaaagaggtatcaccattgacattgctctctggaagtttgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttc |
43045377 |
T |
|
| Q |
582 |
attaagaacatgatcaccggagcatccgaagctga |
616 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
43045376 |
attaagaacatgatcaccggaacatcccaagctga |
43045342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 367 - 598
Target Start/End: Original strand, 43076477 - 43076707
Alignment:
| Q |
367 |
tgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgct |
466 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| |||||| |||| ||||||| |||||||||||| || | | |||| |||||||||| ||| | || |
|
|
| T |
43076477 |
tgatctacaaacttggaggtgttgacaagagtgtcattgagaagtttgagatagaagctgctgaaatgggtaagacttcagtcaagtatgcctggatcct |
43076576 |
T |
|
| Q |
467 |
tgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgccccc |
566 |
Q |
| |
|
||||||||||| ||| || |||||||||||||| || ||||| |||||||| ||||||||||||||||| || | |||| | ||||||||| ||| |
|
|
| T |
43076577 |
tgacaagctcagggctgaacgtgaaagaggtat-accattgagatttctctctggaagtttgagacaacaaagaactgctgcgttgtcattgatgtcccg |
43076675 |
T |
|
| Q |
567 |
ggacacagggatttcattaagaacatgatcac |
598 |
Q |
| |
|
||||||| | |||||||||||||||||||||| |
|
|
| T |
43076676 |
ggacacaagaatttcattaagaacatgatcac |
43076707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 312 - 620
Target Start/End: Complemental strand, 34691477 - 34691171
Alignment:
| Q |
312 |
aacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagat |
411 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||| || ||| ||| | |
|
|
| T |
34691477 |
aacattgtgtttattggtcatgtcaactctgggaagtcaactacggctggtcatttgatttacaagcttggaggtattgaaaagagtgccattgaggcac |
34691378 |
T |
|
| Q |
412 |
ttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacat |
511 |
Q |
| |
|
||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
34691377 |
ttgggaaagaagctgctgagatgaagaagcgttcattcaagtatgcttgggtgcttgacaagctcaacgctgagcgtgaaagaggtatcacaattgacat |
34691278 |
T |
|
| Q |
512 |
ttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaa |
611 |
Q |
| |
|
| |||||| ||||||||||||||||| | | || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
34691277 |
t--tctatgcaagtttgagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttcattaagaacatgatcaccgggacctcccaa |
34691180 |
T |
|
| Q |
612 |
gctgactgt |
620 |
Q |
| |
|
||||||||| |
|
|
| T |
34691179 |
gctgactgt |
34691171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 312 - 620
Target Start/End: Complemental strand, 34713889 - 34713583
Alignment:
| Q |
312 |
aacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagat |
411 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||| || ||| ||| | |
|
|
| T |
34713889 |
aacattgtgtttattggtcatgtcaactctgggaagtcaactacggctggtcatttgatttacaagcttggaggtattgaaaagagtgccattgaggcac |
34713790 |
T |
|
| Q |
412 |
ttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacat |
511 |
Q |
| |
|
||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
34713789 |
ttgggaaagaagctgctgagatgaagaagcgttcattcaagtatgcttgggtgcttgacaagctcaacgctgagcgtgaaagaggtatcacaattgacat |
34713690 |
T |
|
| Q |
512 |
ttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaa |
611 |
Q |
| |
|
| |||||| ||||||||||||||||| | | || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
34713689 |
t--tctatgcaagtttgagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttcattaagaacatgatcaccgggacctcccaa |
34713592 |
T |
|
| Q |
612 |
gctgactgt |
620 |
Q |
| |
|
||||||||| |
|
|
| T |
34713591 |
gctgactgt |
34713583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 312 - 620
Target Start/End: Complemental strand, 16232826 - 16232514
Alignment:
| Q |
312 |
aacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagat |
411 |
Q |
| |
|
|||||| | ||||||||||||||| | || ||||||||| | || || ||||||||| | |||||||||||||||||| ||||| || ||| ||| | |
|
|
| T |
16232826 |
aacattgtctttattggtcatgtcaattctgggaagtcaactactgccggtcatttgctttacaagcttggaggtattcaaaagagtgccattgaggcac |
16232727 |
T |
|
| Q |
412 |
ttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacat |
511 |
Q |
| |
|
||| |||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16232726 |
ttgggaaagaagctgctgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacat |
16232627 |
T |
|
| Q |
512 |
ttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttc----attaagaacatgatcaccggagcatc |
607 |
Q |
| |
|
||| | || ||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| | || |
|
|
| T |
16232626 |
ttccatgtgcaagtttgagacaaccaagtactgttgcaccctcattgatgcccccggacacagggatttcattaattaagaacatgatcatcgggacctc |
16232527 |
T |
|
| Q |
608 |
cgaagctgactgt |
620 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16232526 |
cgaagctgactgt |
16232514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 302 - 595
Target Start/End: Complemental strand, 33861501 - 33861205
Alignment:
| Q |
302 |
gtttcctattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtc |
401 |
Q |
| |
|
||||| |||||||||| || ||||||||||||| ||||| ||||||||| | || | ||||||||| || ||||||||||| ||||||| ||| ||||| |
|
|
| T |
33861501 |
gtttcatattaacattgtggttattggtcatgttgactctgggaagtcaaccacaaccggtcatttgctccacaagcttggatgtattgacaagcatgtc |
33861402 |
T |
|
| Q |
402 |
atcgagagatttgagaaagaagctgctgagataaacaggcgttcattcaagtatgc---ttgggtgcttgacaagctcaaggccgagcgtgaaagaggta |
498 |
Q |
| |
|
|| || || ||||| ||||||||||| |||| ||| | |||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| |
|
|
| T |
33861401 |
attgacagtcttgaggaagaagctgctcagatcgacaagtgttcattcaagtatgctaattgggttcttgacaagctcgaggctgagcgtgaaagaggta |
33861302 |
T |
|
| Q |
499 |
tcacaattgacatttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgat |
595 |
Q |
| |
|
|| | |||||| ||||| | | || |||||||||| | | | || | |||| ||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
33861301 |
tctccattgacgtttctatgcgtaattttgagacaaaccagtaccggtacactgtcattgatgcccctggacacagggattatattaagaacatgat |
33861205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 324 - 616
Target Start/End: Complemental strand, 4232107 - 4231815
Alignment:
| Q |
324 |
attggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaag |
423 |
Q |
| |
|
||||| ||||||||||| ||||||||| | || ||||||| |||||||||||||||||||||||||| ||| ||| || ||||| ||||||||||||| |
|
|
| T |
4232107 |
attggccatgtcgactctgggaagtcaactaccactggtcacttgatctacaagcttggaggtattgacaagcgtgtgattgagaggtttgagaaagaag |
4232008 |
T |
|
| Q |
424 |
ctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaa |
523 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4232007 |
ctgctgagatgaacaagcgttcatttaagtatgcttgggttcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacattgctctgtggaa |
4231908 |
T |
|
| Q |
524 |
gtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaagctga |
616 |
Q |
| |
|
||||||||| || || | | ||||||| ||||||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||| |
|
|
| T |
4231907 |
gtttgagaccactaagtactactgcactgtcattgatgcccctggacacagggatttcattaagaacatgattactggtacatcccaagctga |
4231815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 409
Target Start/End: Original strand, 19964623 - 19964722
Alignment:
| Q |
310 |
ttaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagag |
409 |
Q |
| |
|
|||||||| || ||||||||||||| ||||| ||||||||| | || ||||||| |||||| ||||||||||| |||||| || ||||||| ||||| |
|
|
| T |
19964623 |
ttaacattgtggttattggtcatgttgactctgggaagtcaaccactactggtcacttgatccacaagcttggatatattgacaaccatgtcattgagag |
19964722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 9e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 412 - 616
Target Start/End: Complemental strand, 16349691 - 16349487
Alignment:
| Q |
412 |
ttgagaaagaagctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacat |
511 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||| ||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
16349691 |
ttgagaataaagctgctgagttaaacaaggattctttcaagtatgcgtgggttcttgacaaactcaaggctgagcgcgaaagaggtatcacaattgacaa |
16349592 |
T |
|
| Q |
512 |
ttctctatggaagtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgatcaccggagcatccgaa |
611 |
Q |
| |
|
|||| | | ||| |||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
|
|
| T |
16349591 |
ttctatgttgaattttgagacaaccaagtaccgctgcactatcattgatgcccccggacacagggatttcattaagaacatgattactgggacatcccaa |
16349492 |
T |
|
| Q |
612 |
gctga |
616 |
Q |
| |
|
||||| |
|
|
| T |
16349491 |
gctga |
16349487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 308 - 385
Target Start/End: Complemental strand, 16352284 - 16352207
Alignment:
| Q |
308 |
tattaacattctgtttattggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggagg |
385 |
Q |
| |
|
|||||||||| || |||||||||||||| |||| ||||||||| | || || ||||||||| |||||||||||||||| |
|
|
| T |
16352284 |
tattaacattgtggttattggtcatgtcaactctgggaagtcaaccaccgccggtcatttgttctacaagcttggagg |
16352207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 324 - 595
Target Start/End: Original strand, 7528735 - 7529006
Alignment:
| Q |
324 |
attggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaag |
423 |
Q |
| |
|
||||| ||||||||||| || || ||| | || ||||||| |||||||||||||| ||||||||||| ||| ||| ||||||||||||||||| |||| |
|
|
| T |
7528735 |
attggacatgtcgactctggaaaatcaacaacaactggtcacttgatctacaagctaggaggtattgacaagcgtgtgatcgagagatttgagaaggaag |
7528834 |
T |
|
| Q |
424 |
ctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaa |
523 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || || || || ||| | | ||||| |
|
|
| T |
7528835 |
ctgctgagatgaacaagcgttcattcaagtatgcatgggttcttgacaaacttaaggctgagcgtgaaagaggaattaccatcgatattgccttgtggaa |
7528934 |
T |
|
| Q |
524 |
gtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgat |
595 |
Q |
| |
|
|||||||| ||||| | | |||||| |||||||||| |||||||| | |||||||| ||||||||||| |
|
|
| T |
7528935 |
atttgagaccaccaagtactactgcacagtcattgatgctcccggacatcgtgatttcatcaagaacatgat |
7529006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 324 - 595
Target Start/End: Original strand, 7519364 - 7519635
Alignment:
| Q |
324 |
attggtcatgtcgactccgggaagtcagcgacggctggtcatttgatctacaagcttggaggtattgaaaaggatgtcatcgagagatttgagaaagaag |
423 |
Q |
| |
|
||||| ||||||||||| || || ||| | || ||||||| |||||||||||||| ||||||||||| ||| ||| ||||||||||| ||||| |||| |
|
|
| T |
7519364 |
attggacatgtcgactctggaaaatcaacaacaactggtcacttgatctacaagctaggaggtattgacaagcgtgtgatcgagagattcgagaaggaag |
7519463 |
T |
|
| Q |
424 |
ctgctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaa |
523 |
Q |
| |
|
|||||||||| |||| | | || |||||||| || ||||| ||||||||||| ||||| |||||||||||||| || || ||||| ||| || | ||||| |
|
|
| T |
7519464 |
ctgctgagatgaacaagaggtctttcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgctttgtggaa |
7519563 |
T |
|
| Q |
524 |
gtttgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgat |
595 |
Q |
| |
|
|||||||| ||||| | | |||||| |||||||||| |||||||| | |||||||| ||||||||||| |
|
|
| T |
7519564 |
atttgagaccaccaagtactactgcacagtcattgatgctcccggacatcgtgatttcatcaagaacatgat |
7519635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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