View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9029_low_6 (Length: 553)
Name: NF9029_low_6
Description: NF9029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9029_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 116 - 537
Target Start/End: Original strand, 44228013 - 44228428
Alignment:
| Q |
116 |
tggttctgcttcattaactccaaataatggaggaggaaaagaaatcattagtacagaaacaattgattcaccacaagtacttgacaaagtgaatgccatt |
215 |
Q |
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| T |
44228013 |
tggttctgcttcattaactccaaataatggaggaggaaaagaaataattagtacagaaacaattgattcaccacaagtacttgaaaaagtgaatgccatt |
44228112 |
T |
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| Q |
216 |
cctaaggaaattattatgcctccagtacttcctcagcggcatgcttataacccatatccaccacatatgtactatccacaccctcctccagcagtagcag |
315 |
Q |
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| T |
44228113 |
cctaaggaaattattatgcctccagtacttcctcagcagcatgcttataacccatatccaccacatatgtactatccacaccctcctccagca------g |
44228206 |
T |
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| Q |
316 |
tagcaccaccctatgggttaagctataacacatcatatcctgtttctagcacttcttcttattatgttggtgcccctgtcatgcccatgcatgctaatta |
415 |
Q |
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| T |
44228207 |
tagcaccaccctatgggttaagctataacacatcatatcctgtttctagcacttcttcttattatgttggtgcccctgtcatgcccatgcatgctaatta |
44228306 |
T |
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| Q |
416 |
ctctagactccctccacctcctccaccctctcatccaatcaataactatggtcatcataatgatcatgaagaatatgaaggtggatattgctccattatg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44228307 |
ctctagactccctccacctcctccaccctctcatccaatcaacaactatggtcatcataatgatcatgaagaatatgaaggtggatattgctccattatg |
44228406 |
T |
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| Q |
516 |
tgacaaagtggaggatgatatt |
537 |
Q |
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| T |
44228407 |
tgacaaagtggaggatgatatt |
44228428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 44227898 - 44227977
Alignment:
| Q |
1 |
gtgatgatggtgaagaagattcagatcacaaagaaggtaataatggtgataaaaataataacaaaagtgagggtggtgct |
80 |
Q |
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| T |
44227898 |
gtgatgatggtgaagaagattcagatcacaaagaaggtaataatggtgataaaaataataacaaaagtgagggtggtgct |
44227977 |
T |
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