View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9030_low_1 (Length: 735)
Name: NF9030_low_1
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9030_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 634; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 17 - 721
Target Start/End: Complemental strand, 43107697 - 43106992
Alignment:
| Q |
17 |
caataaggctttacatggtcacatgagatctcatcctgaaagggaatggcggggtatgaaccctaataaggataataatattgattatcatgattatgat |
116 |
Q |
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| T |
43107697 |
caataaggctttacatggtcacatgagatctcatcctgaaagggaatggcggggtatgaaccctaataaggataataatattgattatcatgattatgat |
43107598 |
T |
|
| Q |
117 |
caagatcaatattttcttagtgcattcaattccaaggaattggttattgatgatgaatcaaaatcttggccacgaagattgtttaaaacctgtaaaagag |
216 |
Q |
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| T |
43107597 |
caagatcaatattttcttagtgcattcaattccaaggaattggttattgatgaggaatcaaaatcttggccacgaagattgtttaaaacctgtaaaagag |
43107498 |
T |
|
| Q |
217 |
gccgttcgagtggtgaagttgttattgctgctcaaatactcgtgtatatgtcaacagataaacatttacacaacaccttcgatgaggatttggatgatga |
316 |
Q |
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| T |
43107497 |
gccgttcgagtggtgaagttgttattgctgctcaaatactcgtgtatatgtcaacagataaacatttacatgacaccttcgatgaggatttggataatga |
43107398 |
T |
|
| Q |
317 |
agataagaagaagaatgttctacctagtactagtggtcttgttggtgacattgatgaaacaaaattgaagaatgacaataacaaaagaaggaagaagctg |
416 |
Q |
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| T |
43107397 |
agataagaaggagaatgttctacctagtactagtggtcttgttggtgacattgatgaaacaaaattgaagaatgacaataacaaaagaaggaagaagctg |
43107298 |
T |
|
| Q |
417 |
gtgaaattgatgaattcatattcaacatcaaaagataatgtcttattggactaaatgatgtacgtgatgaatcaaactagtatt-ttttatgttattata |
515 |
Q |
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| T |
43107297 |
gtgaaattgatgaatccatattcaacatcaaaagataatgtcttattggactaaatgatgtacgtgatgaatcaaactagtatttttttatgttattatg |
43107198 |
T |
|
| Q |
516 |
ttatatgtgtaacttcttgtgactagggttttttgtttcctattactnnnnnnnnctagaggtttttccacctactttattctatttcaattgtgtgtgt |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43107197 |
ttatatgtgtaacttcttgtgactagggttttttgtttcctattactaaaaaaaactagaggtttttccacctactttattctatttcaattgtgtgcgt |
43107098 |
T |
|
| Q |
616 |
ttttcttctttcaaatatcaatgttagttgttatttttgtcatatggaggaatgaatatctgacttcatcattgtgtgtttgtgtggtgtattgataatg |
715 |
Q |
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| T |
43107097 |
ttttcttctttcaaatatcaatgttagttgttatttttgttatatggaggaatgaatatctgactttatcattgtgtgtttgtgtggtgtattgataatg |
43106998 |
T |
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| Q |
716 |
tctctg |
721 |
Q |
| |
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|||||| |
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| T |
43106997 |
tctctg |
43106992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 328 - 441
Target Start/End: Original strand, 38186310 - 38186423
Alignment:
| Q |
328 |
agaatgttctacctagtactagtggtcttgttggtgacattgatgaaacaaaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgat |
427 |
Q |
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||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38186310 |
agaatattctacctagtacaagtggtcttgttggtgacatagatgaaacaaaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgat |
38186409 |
T |
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| Q |
428 |
gaattcatattcaa |
441 |
Q |
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|||| ||| ||||| |
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| T |
38186410 |
gaatccatgttcaa |
38186423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 328 - 441
Target Start/End: Complemental strand, 38212047 - 38211934
Alignment:
| Q |
328 |
agaatgttctacctagtactagtggtcttgttggtgacattgatgaaacaaaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgat |
427 |
Q |
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||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38212047 |
agaatattctacctagtacaagtggtcttgttggtgacatagatgaaacaaaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgat |
38211948 |
T |
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| Q |
428 |
gaattcatattcaa |
441 |
Q |
| |
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|||| ||| ||||| |
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| T |
38211947 |
gaatccatgttcaa |
38211934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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