View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9030_low_10 (Length: 400)
Name: NF9030_low_10
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9030_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 2589071 - 2589144
Alignment:
| Q |
181 |
caatgcttcaaactccaccaagaatccaacacaatgggtcaataaacctagcctactgtaggctgccaaaatca |
254 |
Q |
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| T |
2589071 |
caatgcttcaaactccaccaagaatccaacacaatgggtcaataaacctagcctactgtaggctgcctaaatca |
2589144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 2588854 - 2588927
Alignment:
| Q |
18 |
tttaaaaagttggataattgtgcattcaatgtctatatagggaggaagtgagcgaatatacgaagttggacaag |
91 |
Q |
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| T |
2588854 |
tttaaaaagttggacaattgtgcattcaatgtctatatagggagaaagtgagcgaatatacgaagttggacaag |
2588927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 2589020 - 2589057
Alignment:
| Q |
172 |
caactaaaacaatgcttcaaactccaccaagaatccaa |
209 |
Q |
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| T |
2589020 |
caactaaaacaatgcttcaaactccaccaagaatccaa |
2589057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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