View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9030_low_11 (Length: 388)
Name: NF9030_low_11
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9030_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 23273477 - 23273113
Alignment:
| Q |
11 |
tggtcctgctttataagaattgactaataaattaagtcaatgtggtctaattgttggtgacataggctttttagctaataacaaatacaaggtcccatct |
110 |
Q |
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| T |
23273477 |
tggtcctgctttataagaattgactaataaattaagtcaatgtggtctaattgttggtgacatagggtttttggctaataacaaatacaaggtcccatct |
23273378 |
T |
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| Q |
111 |
gccaagagatcaaccgtaacctaactcctatccttcaagcaattcatttagttggatttatgataaatctaattttgagactattaaatatatacacacc |
210 |
Q |
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| T |
23273377 |
gccaagagatcaaccgtaacctaactcctatccttcaagcaattcatttatttggatttatgataaagctaattttgagactattaaatat--------- |
23273287 |
T |
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| Q |
211 |
caaaatctccaacataaataataaattctcaacatataattcctatcgtttcatttattttctttcttatttactgggttggattgggtctgaatcatgt |
310 |
Q |
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| T |
23273286 |
----atctccaacataaataataaattctcaacatataattcctatcgtttcatttattttctttcttatttaccgggttggattgggtctgaatcatgt |
23273191 |
T |
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| Q |
311 |
gttctttctctaactatatctctcaatggaaaataaggctatctcccatttgcattcgtgttgcaattttaatgatgt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23273190 |
gttctttctctaactatatctctcaatggaaaataaggatatctcccatttgcattcgtgttgcaattttaatgatgt |
23273113 |
T |
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