View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9030_low_13 (Length: 345)
Name: NF9030_low_13
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9030_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 11402658 - 11402327
Alignment:
| Q |
1 |
attgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtttatatcttcaatcg |
100 |
Q |
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| T |
11402658 |
attgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatataaattttttgcaatctgtgcatgatgtttatatcttcaatcg |
11402559 |
T |
|
| Q |
101 |
tctgctttgcgctcaaacttttcgcggtgaaaacataatttctcctctcttggttgtaataacttcttcctttgccatatatagttgatagaaccaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11402558 |
tctgctttgcgctcaaacttttcgcggtgaaaacataatttctcctctcttggttgtaataacttcttcctttgccatatataattgatagaaccaaaat |
11402459 |
T |
|
| Q |
201 |
tgtttccaccttttggattgaaattgttctctcttttgatcgaagtttccatgtcctctcccatttgattggattcattaatattattgaagttcacttg |
300 |
Q |
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| T |
11402458 |
tgtttccaccttttggattgaaattgttctctcttttgatcgaagttttcatgtcctctcccatttgattggattcattaatgttattgaagttcacttg |
11402359 |
T |
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| Q |
301 |
acttttcaaggcttcctcctttgctttctctg |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11402358 |
acttttcaaggcttcctcctttgctttctctg |
11402327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 12644010 - 12643834
Alignment:
| Q |
1 |
attgcttgctaaaattaaaccatatggattttcataagactcacaattgttttgatctaaattttctgcaatctgtgcatgatgtttatatcttcaatcg |
100 |
Q |
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|||||||||||||| ||||| ||||||| ||||||||||||||| | | ||||||| | ||||||||| || | | | ||||||| ||||| ||||| |
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| T |
12644010 |
attgcttgctaaaaataaactatatggaatttcataagactcactagt-ttttgatatgaattttctggcatgttttctcgatgtttgtatctgcaatca |
12643912 |
T |
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| Q |
101 |
tctgctttgcgctcaaacttttcgcggtgaaaac----ataatttctcctctcttggttgtaataacttcttcctttg |
174 |
Q |
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||| |||| || |||||||||| ||| |||| ||||||| | ||||||||||||||||| | | |||||||| |
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| T |
12643911 |
gctgttttgtgcccaaacttttcatagtggaaacaactataatttgttctctcttggttgtaatatccttttcctttg |
12643834 |
T |
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