View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9030_low_14 (Length: 344)
Name: NF9030_low_14
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9030_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 26937351 - 26937660
Alignment:
| Q |
18 |
attacaacttagaagtagaatcaccaccattctgactg--agaatttttagaggtacgatcacaaatgcatatatcttcaattaatacaatttcactcaa |
115 |
Q |
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| T |
26937351 |
attacaacttagaagtagaatcaccaccattctgactgtaagaatttttagaggtactatcacaaatgcatatatcttcaattaatacaatttcactcaa |
26937450 |
T |
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| Q |
116 |
ggtgtctgaacagtgaacaaaatacttggtagacttgtttttatttctcatgttgaaaagacatggttaataatatggtccaagtnnnnnnnnnttaaat |
215 |
Q |
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| T |
26937451 |
ggtgtctgaacagtgaacaaaatacttggtagacttgtttttatttctcatgttgaaaagacatggttaataatatggtccaagtaaaaaaaaaaaaaat |
26937550 |
T |
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| Q |
216 |
agcatgtctttcgcaaaacaacttggcctttggatacacgttagtcaatccaatactgcgtcccaatgcacagtcgccgtgaaaattctaaagctagtat |
315 |
Q |
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| T |
26937551 |
agcatg----tcgcaaaacaacttagactttggatacacgttagtcaatccaatactgcgtcccaatgcacggtcaccgtgaaaattctgaagctagtat |
26937646 |
T |
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| Q |
316 |
gtcaagcttctgtg |
329 |
Q |
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| T |
26937647 |
gtcaagcttctgtg |
26937660 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 26135618 - 26135535
Alignment:
| Q |
244 |
tttggatacacgttagtcaatccaatactgcgtcccaatgcacagtcgccgtgaaaattctaaagctagtatgtcaagcttctg |
327 |
Q |
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| T |
26135618 |
tttggataagcgtttgccaatctaataccgcgtcccaatgcacggttgccgtgaaaattcagaagctagtatatcaagcttctg |
26135535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 20791137 - 20791071
Alignment:
| Q |
261 |
caatccaatactgcgtcccaatgcacagtcgccgtgaaaattctaaagctagtatgtcaagcttctg |
327 |
Q |
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||||||| ||| |||||||||||||| || ||||||| |||||| |||||||||| ||||||||||| |
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| T |
20791137 |
caatccattaccgcgtcccaatgcacggttgccgtgagaattctgaagctagtatatcaagcttctg |
20791071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 8917678 - 8917610
Alignment:
| Q |
244 |
tttggatacacgttagtcaatccaatactgcgtcccaatgcacagtcgccgtgaaaattctaaagctag |
312 |
Q |
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| T |
8917678 |
tttggaaacatgtttgtcaatccaataccgcatcccaatgcactttcgtcgtgaaaattctgaagctag |
8917610 |
T |
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