View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9030_low_17 (Length: 241)

Name: NF9030_low_17
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9030_low_17
NF9030_low_17
[»] chr6 (6 HSPs)
chr6 (4-68)||(17289607-17289671)
chr6 (4-68)||(19478866-19478931)
chr6 (4-68)||(10485825-10485890)
chr6 (4-65)||(17280865-17280926)
chr6 (119-173)||(5692048-5692102)
chr6 (4-68)||(29326320-29326383)
[»] chr4 (7 HSPs)
chr4 (4-68)||(24490818-24490882)
chr4 (4-69)||(10119805-10119871)
chr4 (4-68)||(8082773-8082836)
chr4 (118-194)||(25567991-25568067)
chr4 (31-68)||(653745-653782)
chr4 (133-205)||(4330468-4330540)
chr4 (133-205)||(4342921-4342993)
[»] chr1 (9 HSPs)
chr1 (4-69)||(39746673-39746739)
chr1 (4-68)||(31289483-31289547)
chr1 (4-68)||(5602170-5602235)
chr1 (4-68)||(14582476-14582541)
chr1 (4-68)||(26650428-26650493)
chr1 (1-68)||(13891530-13891598)
chr1 (4-68)||(38734854-38734919)
chr1 (4-68)||(12179430-12179494)
chr1 (34-70)||(10106801-10106837)
[»] chr2 (2 HSPs)
chr2 (4-68)||(42915291-42915356)
chr2 (4-68)||(5089807-5089872)
[»] scaffold0132 (2 HSPs)
scaffold0132 (4-68)||(2421-2486)
scaffold0132 (4-68)||(10381-10446)
[»] scaffold0011 (2 HSPs)
scaffold0011 (4-68)||(2355-2420)
scaffold0011 (4-68)||(7609-7674)
[»] chr7 (9 HSPs)
chr7 (4-68)||(7358062-7358127)
chr7 (8-68)||(9974001-9974062)
chr7 (4-68)||(33227047-33227113)
chr7 (11-68)||(10437398-10437456)
chr7 (11-68)||(10451108-10451166)
chr7 (4-68)||(24529118-24529183)
chr7 (158-224)||(36215868-36215934)
chr7 (4-68)||(28291842-28291907)
chr7 (4-68)||(47762434-47762497)
[»] chr3 (6 HSPs)
chr3 (4-68)||(53120249-53120314)
chr3 (4-68)||(13022777-13022842)
chr3 (4-68)||(33088616-33088681)
chr3 (4-68)||(38436270-38436335)
chr3 (28-68)||(3448719-3448759)
chr3 (4-68)||(26929434-26929498)
[»] chr8 (7 HSPs)
chr8 (4-68)||(19430761-19430826)
chr8 (4-68)||(19436203-19436268)
chr8 (4-68)||(19566910-19566975)
chr8 (4-68)||(19572352-19572417)
chr8 (30-68)||(13584930-13584968)
chr8 (4-69)||(31031284-31031350)
chr8 (4-69)||(33616063-33616129)
[»] scaffold0067 (1 HSPs)
scaffold0067 (4-68)||(33305-33368)
[»] chr5 (1 HSPs)
chr5 (31-68)||(13581981-13582018)


Alignment Details
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 17289671 - 17289607
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  17289671 acactagttcttacattgtgtttttctatccaattttctcactagattcaactagtgttccaaca 17289607  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 19478866 - 19478931
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  19478866 acactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 19478931  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 10485825 - 10485890
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaa-ttttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||| || |||| ||||||||    
T  10485825 acactagttcttacattgtgtttttctatccaatttttctcactagatttaactagtattccaaca 10485890  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 17280926 - 17280865
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttcca 65  Q
    |||||||||||| |||  | ||||||||||||||||||||||||||||||| || |||||||    
T  17280926 acactagttcttacattctatttttctatccaattttctcactagattcaactaatgttcca 17280865  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 5692048 - 5692102
Alignment:
Q  119 tattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatc 173  Q
    ||||||||||| | |||||||| ||||| ||||||| | ||||||||||||||||    
T  5692048 tattttttcctgcatcaatgttttgtatattggtcgttgtttctttgcaaatatc 5692102  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 29326320 - 29326383
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||| ||||| ||| |||||||||||||||| ||| |||||||| | || |||||||||||||    
T  29326320 acactaattcttacatagtgtttttctatccaacttt-tcactagaattaactagtgttccaaca 29326383  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 24490818 - 24490882
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||||    
T  24490818 acactagttcttacattgtgtttttctatccaattttctcactagatttaactagtgttccaaca 24490882  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 10119871 - 10119805
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaacat 69  Q
    |||||||||||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  10119871 acactagttcttacattgtgtttttcttatccaattttctcacgagattcaactagtgttccaacat 10119805  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 8082836 - 8082773
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||||||||| ||| |||||||| | || |||||||||||||    
T  8082836 acactagttcttacatagtgtttttctatccaacttt-tcactagaattaactagtgttccaaca 8082773  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 25568067 - 25567991
Alignment:
Q  118 ttattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaa 194  Q
    |||||||||||||||||||| || || ||||||||||   |||||||||||| |||| | ||||| || ||||||||    
T  25568067 ttattttttccttcctcaatattttgaatcttggtcgtcgtttctttgcaaacatcaaagagaatctgttcttgtaa 25567991  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 653745 - 653782
Alignment:
Q  31 atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||||||||||| || |||||||||||||    
T  653745 atccaattttctcactagattaaactagtgttccaaca 653782  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 4330540 - 4330468
Alignment:
Q  133 tcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtc 205  Q
    |||||||| ||||||||||| |  ||||||||| |||||||| | | || ||| ||||||||||| |||||||    
T  4330540 tcaatgttttgtatcttggttgtgatttctttgaaaatatcatacataagttgttcttgtaaatagacttgtc 4330468  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 4342993 - 4342921
Alignment:
Q  133 tcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtc 205  Q
    |||||||| ||||||||||| | | |||||||| ||||||||   | || ||| |||||||||||||||||||    
T  4342993 tcaatgttttgtatcttggtagttgtttctttgaaaatatcatgcataagttgttcttgtaaatacacttgtc 4342921  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 39746739 - 39746673
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaacat 69  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  39746739 acactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaacat 39746673  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 31289483 - 31289547
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||  ||||||||||||||||||||||||| |||||||||||||    
T  31289483 acactagttcttacattgtgttttcttatccaattttctcactagattcaactagtgttccaaca 31289547  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 5602235 - 5602170
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  5602235 acactagttcttacattgtgtttttcttatccaattttctcactaaattcaactagtgttccaaca 5602170  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 14582476 - 14582541
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  14582476 acactagttcttacattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 14582541  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 26650493 - 26650428
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  26650493 acactagttcttacattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 26650428  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13891530 - 13891598
Alignment:
Q  1 cttacactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||||||  || |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  13891530 cttacactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 13891598  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 38734854 - 38734919
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  38734854 acactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 38734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 12179430 - 12179494
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||||||||||||| | |||||| | || ||| |||||||||    
T  12179430 acactagttcttacattgtgtttttctatccaatttttttactagaattaactagggttccaaca 12179494  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 10106801 - 10106837
Alignment:
Q  34 caattttctcactagattcaagtagtgttccaacata 70  Q
    |||||||||||||||||| || |||||||||||||||    
T  10106801 caattttctcactagattgaactagtgttccaacata 10106837  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 42915291 - 42915356
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  42915291 acactagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 42915356  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 5089807 - 5089872
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||| |||||| ||||||| |||||    
T  5089807 acactagttcttacattgtgtttttcttatccaattttctcactaaattcaactagtgtttcaaca 5089872  T

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Target: scaffold0132 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 2486 - 2421
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  2486 acactagttcttatattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 10446 - 10381
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10446 acactagttcttatattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10381  T

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Target: scaffold0011 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 2355 - 2420
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  2355 acactagttctttcattgtgtttttcttatccaattttctcactaggttcaactagtgttccaaca 2420  T

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Target: scaffold0011; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 7609 - 7674
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  7609 acactagttctttcattgtgtttttcttatccaattttctcactaggttcaactagtgttccaaca 7674  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 7358062 - 7358127
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||||||| |||||||||| ||||||||||||||  |||||||| |||||||||||||    
T  7358062 acactagttcttgcattgtgtttttcttatccaattttctcaaaagattcaactagtgttccaaca 7358127  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 9974001 - 9974062
Alignment:
Q  8 tagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  9974001 tagttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 9974062  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 33227047 - 33227113
Alignment:
Q  4 acactagttcttgcatggtgtttttc--tatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||  |||||||||||||||||||||| || |||||||||||||    
T  33227047 acactagttcttacattgtgtttttccttatccaattttctcactagatttaactagtgttccaaca 33227113  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 10437398 - 10437456
Alignment:
Q  11 ttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10437398 ttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10437456  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 10451108 - 10451166
Alignment:
Q  11 ttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10451108 ttcttacattgtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10451166  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 24529118 - 24529183
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  ||  ||||||||| ||||||||||||||||||||| || |||||||||||||    
T  24529118 acactagttcttatattatgtttttcttatccaattttctcactagatttaactagtgttccaaca 24529183  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 36215868 - 36215934
Alignment:
Q  158 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaac 224  Q
    ||||||||||||||||| | |||| ||| | ||||||| ||||||||| || ||||| |||||||||    
T  36215868 tttctttgcaaatatcaaagagaagttgttgttgtaaagacacttgtccaacatttttctcccaaac 36215934  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 28291907 - 28291842
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| |||||||||||| | |||||| || |||||||||||||    
T  28291907 acactagttcttatattgtgtttttcttatccaattttctaattagatttaactagtgttccaaca 28291842  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 47762434 - 47762497
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||||| ||||||| |||||||| | |  |||||||||||||    
T  47762434 acactagttcttacattgtgtttttctattcaatttt-tcactagacttagctagtgttccaaca 47762497  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 53120249 - 53120314
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  53120249 acactagttcttacatcgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 53120314  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 13022777 - 13022842
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  13022777 acactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 13022842  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 33088681 - 33088616
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| |||  ||||||||| ||||||||||||||||||||| || |||||||||||||    
T  33088681 acactagttcttacattatgtttttcttatccaattttctcactagatttaactagtgttccaaca 33088616  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 38436335 - 38436270
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||| || | ||| |||||||    
T  38436335 acactagttcttacattgtgtttttcttatccaattttctcactagatttaactggtgctccaaca 38436270  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 3448719 - 3448759
Alignment:
Q  28 tctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||||||||||||||| || |||||||| ||||    
T  3448719 tctatccaattttctcactagatttaactagtgttcaaaca 3448759  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 26929434 - 26929498
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| |||  ||||||||||||||||||| | |||||| | || || ||||||||||    
T  26929434 acactagttcttacattatgtttttctatccaattttttgactagaattaactaatgttccaaca 26929498  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 19430761 - 19430826
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  19430761 acactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19430826  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 19436203 - 19436268
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  19436203 acactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19436268  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 19566910 - 19566975
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  19566910 acactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19566975  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 19572352 - 19572417
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||  || |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  19572352 acactagttcttatattgtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19572417  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 13584930 - 13584968
Alignment:
Q  30 tatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||||||||||||| || |||||||||||||    
T  13584930 tatccaattttctcactagatttaactagtgttccaaca 13584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 31031284 - 31031350
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaacat 69  Q
    ||||||||||||  |  |||||||||| |||||||||||||| |||||| || ||||||||||||||    
T  31031284 acactagttcttataatgtgtttttcttatccaattttctcattagatttaactagtgttccaacat 31031350  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 33616129 - 33616063
Alignment:
Q  4 acactagttcttgcatggtgtttttct-atccaattttctcactagattcaagtagtgttccaacat 69  Q
    ||||||||||||  || || ||||||| ||||||||||||||||||||| || || |||||||||||    
T  33616129 acactagttcttatattgtatttttcttatccaattttctcactagatttaactaatgttccaacat 33616063  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 33368 - 33305
Alignment:
Q  4 acactagttcttgcatggtgtttttctatccaattttctcactagattcaagtagtgttccaaca 68  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||| | || |||| ||||||||    
T  33368 acactagttcttacattgtgtttttctatccaatttt-tcactagaattaactagtattccaaca 33305  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 13582018 - 13581981
Alignment:
Q  31 atccaattttctcactagattcaagtagtgttccaaca 68  Q
    ||||||||||||||||||||| || |||||||||||||    
T  13582018 atccaattttctcactagattgaactagtgttccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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