View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9030_low_2 (Length: 688)

Name: NF9030_low_2
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9030_low_2
NF9030_low_2
[»] chr2 (33 HSPs)
chr2 (15-527)||(30074674-30075192)
chr2 (77-527)||(30044395-30044848)
chr2 (77-527)||(30049558-30050011)
chr2 (77-527)||(30140602-30141055)
chr2 (121-527)||(30016359-30016756)
chr2 (200-527)||(30088474-30088801)
chr2 (200-527)||(30125078-30125405)
chr2 (98-311)||(30241937-30242150)
chr2 (306-527)||(30241126-30241331)
chr2 (15-127)||(30015577-30015689)
chr2 (516-577)||(30016775-30016836)
chr2 (516-577)||(30088397-30088458)
chr2 (516-577)||(30125001-30125062)
chr2 (516-577)||(30044315-30044376)
chr2 (516-577)||(30049478-30049539)
chr2 (516-577)||(30075211-30075272)
chr2 (516-577)||(30140522-30140583)
chr2 (17-80)||(30045035-30045098)
chr2 (17-80)||(30050198-30050261)
chr2 (17-80)||(30141242-30141305)
chr2 (526-577)||(30241019-30241070)
chr2 (15-80)||(18354247-18354312)
chr2 (15-80)||(23347920-23347985)
chr2 (650-688)||(30016917-30016955)
chr2 (650-688)||(30044197-30044235)
chr2 (650-688)||(30049360-30049398)
chr2 (650-688)||(30075352-30075390)
chr2 (650-688)||(30124882-30124920)
chr2 (650-688)||(30140404-30140442)
chr2 (15-80)||(12742758-12742823)
chr2 (112-152)||(30088799-30088839)
chr2 (112-152)||(30125403-30125443)
chr2 (650-685)||(30088281-30088316)
[»] chr7 (5 HSPs)
chr7 (15-80)||(26906707-26906772)
chr7 (15-80)||(43070322-43070387)
chr7 (24-80)||(14232004-14232060)
chr7 (15-80)||(1264718-1264783)
chr7 (15-80)||(48847155-48847220)
[»] chr8 (3 HSPs)
chr8 (15-78)||(33686215-33686278)
chr8 (15-80)||(8163915-8163980)
chr8 (15-80)||(14672513-14672578)
[»] chr5 (6 HSPs)
chr5 (15-80)||(7472448-7472513)
chr5 (15-80)||(9044919-9044984)
chr5 (14-80)||(30441536-30441601)
chr5 (15-80)||(22002992-22003057)
chr5 (15-80)||(30442836-30442901)
chr5 (15-80)||(32871974-32872039)
[»] chr3 (13 HSPs)
chr3 (15-80)||(24758928-24758993)
chr3 (15-80)||(24767925-24767990)
chr3 (15-80)||(24813148-24813213)
chr3 (15-80)||(24827021-24827086)
chr3 (33-80)||(19769693-19769740)
chr3 (15-80)||(37984867-37984932)
chr3 (15-80)||(47761416-47761481)
chr3 (15-80)||(53024834-53024898)
chr3 (18-80)||(33648287-33648349)
chr3 (15-80)||(17689451-17689516)
chr3 (31-78)||(12531341-12531388)
chr3 (15-57)||(32790996-32791038)
chr3 (15-80)||(11396610-11396675)
[»] chr6 (4 HSPs)
chr6 (15-80)||(21999304-21999369)
chr6 (15-80)||(31891422-31891487)
chr6 (15-80)||(22681782-22681847)
chr6 (311-360)||(32834833-32834882)
[»] chr4 (2 HSPs)
chr4 (15-80)||(29861407-29861472)
chr4 (16-80)||(24262573-24262637)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-80)||(37069-37132)
[»] chr1 (2 HSPs)
chr1 (15-80)||(25226765-25226830)
chr1 (15-80)||(32437619-32437684)
[»] scaffold0045 (1 HSPs)
scaffold0045 (15-76)||(10258-10319)
[»] scaffold0003 (1 HSPs)
scaffold0003 (47-80)||(33626-33659)


Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 15 - 527
Target Start/End: Original strand, 30074674 - 30075192
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttcattcctgttgggtaaaataggcatattagataaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30074674 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttcattcctgttgggtaaaataggcatattagataaat 30074773  T
Q  115 atattgtccctaatacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaattattttacgtcaaggacattaagacttgtgaccttaaatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30074774 atattgtccctaatacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaattattttacgtcaaggacattaagacttgtgaccttaaatc 30074873  T
Q  215 tatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctagtaagcctattttcacgtcaacaaccac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  30074874 tatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgag-ttactggttttatctagtaagcctattttcacgtcaacaaccac 30074972  T
Q  315 atacatccacttttaaactacta-------ttttttatttatatttcatttcaaattgagaacaaaattaagtgcaaaacttaggaaaatccattgaaca 407  Q
    ||||||| |||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30074973 atacatcaacttttaaactactatttttttttttttttttatatttcatttcaaattgagaacaaaattaagcgcaaaacttaggaaaatccattgaaca 30075072  T
Q  408 caagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgctcaaatgca 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30075073 caagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgttcaaatgca 30075172  T
Q  508 tgtactttaagtttacaatg 527  Q
    ||||||||||||||||||||    
T  30075173 tgtactttaagtttacaatg 30075192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 77 - 527
Target Start/End: Complemental strand, 30044848 - 30044395
Alignment:
Q  77 ttcattcctgttgggtaaaataggcatattagataaatatattgtccctaatacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaatta 176  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30044848 ttcattcatgttgggtaaaataggcatactagataaatatattgtccctaacacatcttgcttgttgtttgaattgaatgatgtatgcaagtcaaaatta 30044749  T
Q  177 ttttacgtcaaggacattaagacttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  30044748 ttttacgtcaaggacattaagacttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgag-ttactg 30044650  T
Q  277 gttttatctagtaagcctattttcacgtcaacaaccacatacatccacttttaaactacta----ttttttatttatatttcatttcaaattgagaacaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    |||||| ||||||||||||||||||||||||||||    
T  30044649 gttttatctagtaagcctattttcacgtcaacaaccacatacatcaacttttaaactactattttttttttttttatatttcatttcaaattgagaacaa 30044550  T
Q  373 aattaagtgcaaaacttaggaaaatccattgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgatta 472  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30044549 aattaagcgcaaaacttaggaaaatccattgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgatta 30044450  T
Q  473 gcggattagttaagttgttaatttgctcaaatgcatgtactttaagtttacaatg 527  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30044449 gcggattagttaagttgttaatttgttcaaatgcatgtactttaagtttacaatg 30044395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 77 - 527
Target Start/End: Complemental strand, 30050011 - 30049558
Alignment:
Q  77 ttcattcctgttgggtaaaataggcatattagataaatatattgtccctaatacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaatta 176  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30050011 ttcattcatgttgggtaaaataggcatactagataaatatattgtccctaacacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaatta 30049912  T
Q  177 ttttacgtcaaggacattaagacttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  30049911 ttttacgtcaaggacattaagacttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgag-ttactg 30049813  T
Q  277 gttttatctagtaagcctattttcacgtcaacaaccacatacatccacttttaaactac----tattttttatttatatttcatttcaaattgagaacaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    | |||||| ||||||||||||||||||||||||||||    
T  30049812 gttttatctagtaagcctattttcacgtcaacaaccacatacatcaacttttaaactacttttttttttttttttatatttcatttcaaattgagaacaa 30049713  T
Q  373 aattaagtgcaaaacttaggaaaatccattgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgatta 472  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049712 aattaagcgcaaaacttaggaaaatccattgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgatta 30049613  T
Q  473 gcggattagttaagttgttaatttgctcaaatgcatgtactttaagtttacaatg 527  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30049612 gcggattagttaagttgttaatttgttcaaatgcatgtactttaagtttacaatg 30049558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 77 - 527
Target Start/End: Complemental strand, 30141055 - 30140602
Alignment:
Q  77 ttcattcctgttgggtaaaataggcatattagataaatatattgtccctaatacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaatta 176  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30141055 ttcattcatgttgggtaaaataggcatactagataaatatattgtccctaacacatcttgcttgttgtttgaattgaatgatgtatgcaagtcaaaatta 30140956  T
Q  177 ttttacgtcaaggacattaagacttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  30140955 ttttacgtcaaggacattaagacttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgag-ttactg 30140857  T
Q  277 gttttatctagtaagcctattttcacgtcaacaaccacatacatccacttttaaactacta----ttttttatttatatttcatttcaaattgagaacaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    |||||| ||||||||||||||||||||||||||||    
T  30140856 gttttatctagtaagcctattttcacgtcaacaaccacatacatcaacttttaaactactattttttttttttttatatttcatttcaaattgagaacaa 30140757  T
Q  373 aattaagtgcaaaacttaggaaaatccattgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgatta 472  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30140756 aattaagcgcaaaacttaggaaaatccattgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgatta 30140657  T
Q  473 gcggattagttaagttgttaatttgctcaaatgcatgtactttaagtttacaatg 527  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30140656 gcggattagttaagttgttaatttgttcaaatgcatgtactttaagtttacaatg 30140602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 121 - 527
Target Start/End: Original strand, 30016359 - 30016756
Alignment:
Q  121 tccctaatacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaattattttacgtcaaggacattaagacttgtgaccttaaatctatcaa 220  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30016359 tccctaacacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaattattttacgtcaaggacattaagacttttgaccttaaatctatcaa 30016458  T
Q  221 ctagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctagtaagcctattttcacgtcaacaaccacatacat 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |    
T  30016459 ctagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctagtaagcctattttcacgtcaaca----------t 30016548  T
Q  321 ccacttttaaactactatttttta-tttatatttcatttcaaattgagaacaaaattaagtgcaaaacttaggaaaatccattgaacacaagttatacta 419  Q
    | |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  30016549 caacttttaaactactatttttttgtttatatttcatttcaaattgagaacaaaattaattgcaaaatttaggaaaatccattgaacacaagttatacta 30016648  T
Q  420 aaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgctcaaatgcatgtactttaagt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016649 aaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgctcaaatgcatgtactttaagt 30016748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 200 - 527
Target Start/End: Complemental strand, 30088801 - 30088474
Alignment:
Q  200 ttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctagtaagcctatttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30088801 ttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctaataagcctatttt 30088702  T
Q  300 cacgtcaacaaccacatacatccacttttaaactactattttttatttatatttcatttcaaattgagaacaaaattaagtgcaaaacttaggaaaatcc 399  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30088701 cacgtcaacaaccacatacatcaacttttaaactactattttttgtttatatttcatttcaaattgagaacaaaattaagtgcaaaacttaggaaaatcc 30088602  T
Q  400 attgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30088601 attgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgct 30088502  T
Q  500 caaatgcatgtactttaagtttacaatg 527  Q
    |||| |||||||||||||||||||||||    
T  30088501 caaaagcatgtactttaagtttacaatg 30088474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 200 - 527
Target Start/End: Complemental strand, 30125405 - 30125078
Alignment:
Q  200 ttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctagtaagcctatttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30125405 ttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctaataagcctatttt 30125306  T
Q  300 cacgtcaacaaccacatacatccacttttaaactactattttttatttatatttcatttcaaattgagaacaaaattaagtgcaaaacttaggaaaatcc 399  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30125305 cacgtcaacaaccacatacatcaacttttaaactactattttttgtttatatttcatttcaaattgagaacaaaattaagtgcaaaacttaggaaaatcc 30125206  T
Q  400 attgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30125205 attgaacacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgct 30125106  T
Q  500 caaatgcatgtactttaagtttacaatg 527  Q
    |||| |||||||||||||||||||||||    
T  30125105 caaaagcatgtactttaagtttacaatg 30125078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 98 - 311
Target Start/End: Complemental strand, 30242150 - 30241937
Alignment:
Q  98 aggcatattagataaatatattgtccctaatacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaattattttacgtcaaggacattaag 197  Q
    ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242150 aggcatactagataactatattgtccctaacacatcttacttgttgtttgaattgaatgatgtatgcaagtcaaaattattttacgtcaaggacattaag 30242051  T
Q  198 acttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctagtaagcctatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242050 acttgtgaccttaaatctatcaactagaaaccctatgaggatcaaacttaaatcctaaattgatctttcgagtttattggttttatctagtaagcctatt 30241951  T
Q  298 ttcacgtcaacaac 311  Q
    ||||||||||||||    
T  30241950 ttcacgtcaacaac 30241937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 306 - 527
Target Start/End: Complemental strand, 30241331 - 30241126
Alignment:
Q  306 aacaaccacatacatccacttttaaactactattttttatttatatttcatttcaaattgagaacaaaattaagtgcaaaacttaggaaaatccattgaa 405  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241331 aacaaccacatacatcaacttttaaactactattttttgtttatatttcatttcaaattgagaacaaaattaagtgcaaaacttaggaaaatccattgaa 30241232  T
Q  406 cacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagagcatgattagcggattagttaagttgttaatttgctcaaatg 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||    
T  30241231 cacaagttatactaaaccgacagttttaagtttacaatgataccaaaaccaattgagag----------------gttaagttgttaatttgctcaaatg 30241148  T
Q  506 catgtactttaagtttacaatg 527  Q
    ||||||||||||||||||||||    
T  30241147 catgtactttaagtttacaatg 30241126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 30015577 - 30015689
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttcattcctgttgggtaaaataggcatattagataaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30015577 acatcaagagatggtttgaagatattattaatggatgacaatggggattgtatcaacaccacttcattcctattgggtaaaataggcatattagataaat 30015676  T
Q  115 atattgtccctaa 127  Q
    |||||||||||||    
T  30015677 atattgtccctaa 30015689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 516 - 577
Target Start/End: Original strand, 30016775 - 30016836
Alignment:
Q  516 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016775 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 30016836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 30088458 - 30088397
Alignment:
Q  516 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30088458 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 30088397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 30125062 - 30125001
Alignment:
Q  516 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30125062 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 30125001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 30044376 - 30044315
Alignment:
Q  516 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 577  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30044376 aagtttacaatgcaatgataccaagaccaatcgagtaaaaagtttcatgcgcaattagtgat 30044315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 30049539 - 30049478
Alignment:
Q  516 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 577  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30049539 aagtttacaatgcaatgataccaagaccaatcgagtaaaaagtttcatgcgcaattagtgat 30049478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 516 - 577
Target Start/End: Original strand, 30075211 - 30075272
Alignment:
Q  516 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 577  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30075211 aagtttacaatgcaatgataccaagaccaatcgagtaaaaagtttcatgcgcaattagtgat 30075272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 30140583 - 30140522
Alignment:
Q  516 aagtttacaatgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 577  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30140583 aagtttacaatgcaatgataccaagaccaatcgagtaaaaagtttcatgcgcaattagtgat 30140522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 30045098 - 30045035
Alignment:
Q  17 atcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  30045098 atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttca 30045035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 30050261 - 30050198
Alignment:
Q  17 atcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  30050261 atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttca 30050198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 30141305 - 30141242
Alignment:
Q  17 atcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  30141305 atcaagatatggtttgaatatattattaatggatgacaatggggattgtatcaacaccacttca 30141242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 526 - 577
Target Start/End: Complemental strand, 30241070 - 30241019
Alignment:
Q  526 tgcaatgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 577  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30241070 tgcaacgataccaagaccaattgagtaaaaagtttcatgcgcaattagtgat 30241019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 18354312 - 18354247
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  18354312 acatcaagggatggtctgaagaaattattaacggatgacaatggagattgtatcagcaccacttca 18354247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 23347985 - 23347920
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||| |||||||| |||||||||||| |||||||||| ||||||||||    
T  23347985 acatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttca 23347920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 688
Target Start/End: Original strand, 30016917 - 30016955
Alignment:
Q  650 gatgataaaaaggtggaaattatactaactaaacagaaa 688  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30016917 gatgataaaaaggtggaaattatactaattaaacagaaa 30016955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 688
Target Start/End: Complemental strand, 30044235 - 30044197
Alignment:
Q  650 gatgataaaaaggtggaaattatactaactaaacagaaa 688  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30044235 gatgataaaaaggtggaaattatactaattaaacagaaa 30044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 688
Target Start/End: Complemental strand, 30049398 - 30049360
Alignment:
Q  650 gatgataaaaaggtggaaattatactaactaaacagaaa 688  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30049398 gatgataaaaaggtggaaattatactaattaaacagaaa 30049360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 688
Target Start/End: Original strand, 30075352 - 30075390
Alignment:
Q  650 gatgataaaaaggtggaaattatactaactaaacagaaa 688  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30075352 gatgataaaaaggtggaaattatactaattaaacagaaa 30075390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 688
Target Start/End: Complemental strand, 30124920 - 30124882
Alignment:
Q  650 gatgataaaaaggtggaaattatactaactaaacagaaa 688  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30124920 gatgataaaaaggtggaaattatactaattaaacagaaa 30124882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 688
Target Start/End: Complemental strand, 30140442 - 30140404
Alignment:
Q  650 gatgataaaaaggtggaaattatactaactaaacagaaa 688  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30140442 gatgataaaaaggtggaaattatactaattaaacagaaa 30140404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 12742758 - 12742823
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||| |||||||| ||||||||||||  ||| ||||| ||||||||||    
T  12742758 acatcaagggatggtctgaagaaattattaacggatgacaatgggaattatatcagcaccacttca 12742823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 30088839 - 30088799
Alignment:
Q  112 aatatattgtccctaatacatcttacttgttgtttgaattg 152  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  30088839 aatatattgtccctaacacatcttacttgtggtttgaattg 30088799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 30125443 - 30125403
Alignment:
Q  112 aatatattgtccctaatacatcttacttgttgtttgaattg 152  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  30125443 aatatattgtccctaacacatcttacttgtggtttgaattg 30125403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 650 - 685
Target Start/End: Complemental strand, 30088316 - 30088281
Alignment:
Q  650 gatgataaaaaggtggaaattatactaactaaacag 685  Q
    |||||||||||||||||||||||||||| |||||||    
T  30088316 gatgataaaaaggtggaaattatactaattaaacag 30088281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 26906772 - 26906707
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  26906772 acatcaagggatggtctgaagatattattaacggatgacaatggagattgtatcaacaccatttca 26906707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 43070387 - 43070322
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||| |||||||| |||||||||||| |||||||||| ||||||||||    
T  43070387 acatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttca 43070322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 14232004 - 14232060
Alignment:
Q  24 gatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||| ||||||||||||||| |||||||||||| |||||||| |  |||||||||    
T  14232004 gatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttca 14232060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 1264718 - 1264783
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||||||||||||   |||||||||  |||||||| | ||||||||||    
T  1264718 acatcaagggatggtctgaagatattattaacatatgacaatgaggattgtattagcaccacttca 1264783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 48847220 - 48847155
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||||||||||||   |||||||||  |||||||| | ||||||||||    
T  48847220 acatcaagggatggtctgaagatattattaacatatgacaatgaggattgtattagcaccacttca 48847155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 33686278 - 33686215
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccactt 78  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||    
T  33686278 acatcaagagatggtttgaagatattattaacggatgacgatggggattgtatcaacactactt 33686215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 8163915 - 8163980
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  8163915 acatcaagggatggtttgaagatattattaacggatgacaatggggattatatcagcaccacttca 8163980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 14672578 - 14672513
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||||||||||||| |||| ||||||||||  ||||||||||| |||||||||| ||||||||||    
T  14672578 acatcaagagatggtctgaaaatattattaacagatgacaatggggattgtatcagcaccacttca 14672513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 7472513 - 7472448
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  7472513 acatcaagggatggtctgaagaaattattaacggatgacaatggagattgtatcagcaccacttca 7472448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 9044919 - 9044984
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||| |||||||| |||||||||||| |||||||||| ||||||||||    
T  9044919 acatcaagggatggtctgaagaaattattaacggatgacaatggggattgtatcagcaccacttca 9044984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 30441601 - 30441536
Alignment:
Q  14 gacatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||||||| |||||| |||||| |||||||| |||||||||||| |||||||||| ||||||||||    
T  30441601 gacatcaagggatggtctgaagaaattattaacggatgacaatgg-gattgtatcagcaccacttca 30441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 22003057 - 22002992
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| ||| || ||||||||||||||| |||| ||||||| |||||||||| ||||||||||    
T  22003057 acatcaagggatagtctgaagatattattaacggataacaatggggattgtatcagcaccacttca 22002992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 30442901 - 30442836
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| ||||||||||||||| |||||||||||| |||||||| |  |||||||||    
T  30442901 acatcaagggatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttca 30442836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 32871974 - 32872039
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||||||||||||   |||||||||| |||||||||| | ||||||||    
T  32871974 acatcaagggatggtatgaagatattattaacaaatgacaatggggattgtatcagcgccacttca 32872039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 24758993 - 24758928
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  24758993 acatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttca 24758928  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 24767990 - 24767925
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  24767990 acatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttca 24767925  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 24813148 - 24813213
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  24813148 acatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttca 24813213  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 24827021 - 24827086
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||    
T  24827021 acatcaagggatggtctgaagatattattaacggttgacaatggagattgtattaacaccacttca 24827086  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 19769693 - 19769740
Alignment:
Q  33 aagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  19769693 aagatattattaacggatgacaatggagattgtatcagcaccacttca 19769740  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 37984867 - 37984932
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||| | ||||||||||||||| |||||||| ||| |||||||||| ||||||||||    
T  37984867 acatcaagggatgatctgaagatattattaacggatgacattggggattgtatcagcaccacttca 37984932  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 47761481 - 47761416
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||||||| || |||| ||||||| || |||||||||| | |||||||||||||||||||||    
T  47761481 acatcaagagatcgtctgaacatattatcaacggatgacaatagggattgtatcaacaccacttca 47761416  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 53024898 - 53024834
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||||||||| || | ||||||||||||||||||| ||||||||||||    
T  53024898 acatcaagggatggtctgaagatattat-aacgaatgacaatggagattgtattaacaccacttca 53024834  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 33648349 - 33648287
Alignment:
Q  18 tcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||| |||||| ||||||||||||||| |||||||||||| |||  ||| ||||||||||||    
T  33648349 tcaagggatggtctgaagatattattaacggatgacaatggggataatattaacaccacttca 33648287  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 17689451 - 17689516
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||||||||||||  ||||||||||| |||| ||||| ||||| ||||    
T  17689451 acatcaagggatggtctgaagatattattaacagatgacaatggggattatatcagcaccatttca 17689516  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 12531388 - 12531341
Alignment:
Q  31 tgaagatattattaatggatgacaatggagattgtatcaacaccactt 78  Q
    ||||||||||| ||| |||||||||||| |||||||||| ||||||||    
T  12531388 tgaagatattactaacggatgacaatggggattgtatcagcaccactt 12531341  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 32791038 - 32790996
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatg 57  Q
    |||| |||||||||||||||||||||||||| | |||||||||    
T  32791038 acattaagagatggtttgaagatattattaacgcatgacaatg 32790996  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 11396610 - 11396675
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||| |||||||||| ||||||||||||||| | |||||||||| || ||||   |||||||||||    
T  11396610 acattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttca 11396675  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 21999369 - 21999304
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||||||||||||  ||||||||||| |||||||||| ||||||||||    
T  21999369 acatcaagggatggtatgaagatattattaacagatgacaatggggattgtatcagcaccacttca 21999304  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 31891487 - 31891422
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| |||||||||||||||   |||||||||| ||||||||||  |||||||||    
T  31891487 acatcaagggatggtctgaagatattattaacatatgacaatggggattgtatcagtaccacttca 31891422  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 22681782 - 22681847
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||| |||||||||| ||||||||||||||| | |||||||||| || ||||   |||||||||||    
T  22681782 acattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttca 22681847  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 32834882 - 32834833
Alignment:
Q  311 ccacatacatccacttttaaactactattttttatttatatttcatttca 360  Q
    ||||||||||| |||||| ||||||| |||||  ||||||||||||||||    
T  32834882 ccacatacatcaactttttaactactctttttattttatatttcatttca 32834833  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 29861472 - 29861407
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||||||||||||| |||| ||||||||||  ||||||||||| |||||||||| ||||||||||    
T  29861472 acatcaagagatggtctgaaaatattattaacagatgacaatggggattgtatcagcaccacttca 29861407  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 24262573 - 24262637
Alignment:
Q  16 catcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||||||| | | |||||||||||||  ||||||||||  |||||||||||||||||||||    
T  24262573 catcaagagatgatctaaagatattattaacagatgacaatgatgattgtatcaacaccacttca 24262637  T

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Target: scaffold0035 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 37069 - 37132
Alignment:
Q  17 atcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||| |||||| |||||||||||||||  ||||||||||| |||||||||| ||||||||||    
T  37069 atcaagggatggtctgaagatattattaacagatgacaatggggattgtatcagcaccacttca 37132  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 25226765 - 25226830
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||||||| |||||| ||||||||||||||| |||||||||||| |||||||| |  |||||||||    
T  25226765 acatcaagggatggtctgaagatattattaacggatgacaatggggattgtataaggaccacttca 25226830  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 32437684 - 32437619
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccacttca 80  Q
    |||| |||||||||| ||||||||||||||| | |||||||||| || ||||   |||||||||||    
T  32437684 acattaagagatggtctgaagatattattaacgcatgacaatggggactgtaattacaccacttca 32437619  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 10319 - 10258
Alignment:
Q  15 acatcaagagatggtttgaagatattattaatggatgacaatggagattgtatcaacaccac 76  Q
    ||||||||  ||||| ||||||||||||||| |||| ||||||  |||||||||| ||||||    
T  10319 acatcaaggaatggtctgaagatattattaacggataacaatgaggattgtatcagcaccac 10258  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 33659 - 33626
Alignment:
Q  47 ggatgacaatggagattgtatcaacaccacttca 80  Q
    ||||||||||||||||| ||||||||||||||||    
T  33659 ggatgacaatggagattatatcaacaccacttca 33626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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