View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9030_low_5 (Length: 653)
Name: NF9030_low_5
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9030_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 31011237 - 31011609
Alignment:
| Q |
19 |
attctaattagtaactagctagtttatgtgagttaatcagatttctaagcaattatgaagtaataagttgatgttggtggcagtaaataggaagaacaaa |
118 |
Q |
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| T |
31011237 |
attctaattagtaactagctagtttatgtgagttaatcagatttctaagcaattatgaagtaataagttgatgttggtggcagtaaataggaagaacaaa |
31011336 |
T |
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| Q |
119 |
acttgcaatatgaaatatgtcatttatgcactaaacgtgtcggttcaatcatacatgataatgtttagaatgatgacaggtaacagtccccttagaacca |
218 |
Q |
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| T |
31011337 |
acttgcaatatgaaatatgtcatttatgcactaaacgtgtcggttcaatcatacatgataatgtttagaatgatgacaggtaacagtccccttagaacca |
31011436 |
T |
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| Q |
219 |
aagagtagattgataaatgacactagagaaacatgtataaccatattgatgtttaggttttcaaacatgaaattccaaacttgtctctcagagtttaagc |
318 |
Q |
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| T |
31011437 |
aagagtagattgataaatgacactagagaaaaatgtataaccatattgatgtttaggttttcaaacatgaaattccaaacttgtctctcagagtttaagc |
31011536 |
T |
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| Q |
319 |
ttaacatatattttagtcacccagaagttnnnnnnnnnntctgatatatttcataaaagtaaggaatgttcaa |
391 |
Q |
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| T |
31011537 |
ctaacatatattttagtcacccagaagttaaaaaaaaaatctgatatatttcataaaagtaaggaatgttcaa |
31011609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 417 - 625
Target Start/End: Original strand, 31011609 - 31011817
Alignment:
| Q |
417 |
aatgttcattgactttgtcaaagatttattttccatgtggaaattgactagc-actttaaggtgtgtattctccnnnnnnnnnccttcgaaaaaggggca |
515 |
Q |
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| T |
31011609 |
aatgttcattgactttgtcaaagatttattttccatgtggaaattgactagccactttaaggtgtgtattctcctttttttt-ccttcgaaaaaggggca |
31011707 |
T |
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| Q |
516 |
tattttttcaaccatattcttttcatctacaaaactcaaacccgagaccttacttaaaagatctgagaccatttttctatggacctttgtggttattact |
615 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31011708 |
tatttttccaaccatattcttttcatctacaaaactcaaacccgagaccttacttaaaagatctgagaccatttttctctggacctttgtggttattact |
31011807 |
T |
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| Q |
616 |
ttcaagttcc |
625 |
Q |
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| T |
31011808 |
tccaagttcc |
31011817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 578
Target Start/End: Original strand, 7170633 - 7170688
Alignment:
| Q |
523 |
tcaaccatattcttttcatctacaaaactcaaacccgagaccttacttaaaagatc |
578 |
Q |
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| T |
7170633 |
tcaaccacatttttttcatctacaagactcaaatatgagaccttacttaaaagatc |
7170688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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