View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9030_low_7 (Length: 567)
Name: NF9030_low_7
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9030_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 175 - 388
Target Start/End: Complemental strand, 33265764 - 33265554
Alignment:
| Q |
175 |
tgaaaatatacacatttttgagaggggctaattcttcaaactggtgattaaggtattgccccataatctcataacaaatttatctttggaggggactcat |
274 |
Q |
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| T |
33265764 |
tgaaaatatacacatttttgagaggggctaattcttcaaactggtgattaagatattgccccataatctcataacaaatttatctttggaggggactca- |
33265666 |
T |
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| Q |
275 |
aaccctgagaagtagtatattatattatagctgcaatcaacacacagttgcaggtcttgaaaaatgcttttggatgttaagaaactgcttgcacaaatat |
374 |
Q |
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| T |
33265665 |
--ccctgagaagtagtatattatattatagctgcaatcaacacacagttgcaggtcttgaaaaatgcttttggatcttgagaaactgcttgcacaaatat |
33265568 |
T |
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| Q |
375 |
tctaccaaaaatgg |
388 |
Q |
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|||||||||||||| |
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| T |
33265567 |
tctaccaaaaatgg |
33265554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 411 - 553
Target Start/End: Complemental strand, 33265510 - 33265364
Alignment:
| Q |
411 |
ctcagccttgtaaactgtttcacaatttgacatacaaaatctaaactgtacaaacatcaatttcaattggttaaaaaagtat----ttataaaaataagt |
506 |
Q |
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| T |
33265510 |
ctcagccttgtaaactgtttcacaatttgacatacaaaatctaaactgtacaaacatcaatttcaattggttaaaaaagtatttaattataaaaataagt |
33265411 |
T |
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| Q |
507 |
gaattttcgaaagtatatcctcaatagtatttctaactcaaggtatt |
553 |
Q |
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| T |
33265410 |
gaattttcgaaagtatatcctcaatagtatttctaactcaaggtatt |
33265364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 33265896 - 33265760
Alignment:
| Q |
15 |
cagagaggctataatacagtatgaaatcctaatgttcctagtcattttgagggtagcaaaagtttatatatcagaaaatattccttgagcagcaatcaat |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33265896 |
cagagaggttataatacagtatgaaatcctaatgttcctagtcattttgagggtagtaaaagtttatatatcagaaaatattccttgagcagcaatcaat |
33265797 |
T |
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| Q |
115 |
gatgcttgggaatatactgctttccttcaatttgaaa |
151 |
Q |
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| T |
33265796 |
gatgcttgggaatatactgctttccttcaatttgaaa |
33265760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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