View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9030_low_9 (Length: 403)

Name: NF9030_low_9
Description: NF9030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9030_low_9
NF9030_low_9
[»] chr2 (8 HSPs)
chr2 (17-358)||(26382216-26382556)
chr2 (34-111)||(26384057-26384134)
chr2 (50-144)||(23692860-23692964)
chr2 (34-111)||(2218520-2218595)
chr2 (35-111)||(1041356-1041431)
chr2 (50-111)||(4876911-4876972)
chr2 (352-386)||(26382562-26382596)
chr2 (50-113)||(23696647-23696710)
[»] chr8 (20 HSPs)
chr8 (114-358)||(14366334-14366578)
chr8 (34-145)||(17007898-17008018)
chr8 (34-145)||(17540932-17541052)
chr8 (50-111)||(37718233-37718294)
chr8 (53-115)||(2308-2370)
chr8 (34-111)||(32231440-32231516)
chr8 (53-111)||(753459-753517)
chr8 (50-115)||(31709031-31709096)
chr8 (54-144)||(16083415-16083515)
chr8 (54-144)||(16084822-16084922)
chr8 (54-144)||(16086229-16086329)
chr8 (54-144)||(16087636-16087736)
chr8 (53-115)||(20134875-20134938)
chr8 (34-109)||(17526559-17526633)
chr8 (54-112)||(16077750-16077808)
chr8 (56-111)||(21945924-21945979)
chr8 (57-113)||(20131752-20131809)
chr8 (50-111)||(31711251-31711312)
chr8 (53-115)||(21408489-21408552)
chr8 (53-115)||(21802981-21803044)
[»] chr3 (23 HSPs)
chr3 (114-358)||(8856647-8856891)
chr3 (36-142)||(17593793-17593910)
chr3 (50-112)||(8368195-8368257)
chr3 (55-109)||(54110948-54111002)
chr3 (54-111)||(12206640-12206697)
chr3 (53-115)||(15926660-15926721)
chr3 (36-102)||(17601801-17601866)
chr3 (54-115)||(12209048-12209109)
chr3 (54-111)||(14433434-14433491)
chr3 (54-115)||(14566198-14566259)
chr3 (53-115)||(16082800-16082863)
chr3 (53-115)||(103343-103405)
chr3 (50-112)||(19767616-19767679)
chr3 (50-115)||(15417854-15417919)
chr3 (54-107)||(10807612-10807665)
chr3 (54-103)||(10811739-10811788)
chr3 (54-115)||(14429949-14430009)
chr3 (54-114)||(14561015-14561075)
chr3 (66-115)||(18556787-18556838)
chr3 (53-111)||(94485-94543)
chr3 (114-145)||(26907104-26907135)
chr3 (53-102)||(16091976-16092024)
chr3 (123-188)||(26996737-26996802)
[»] chr6 (6 HSPs)
chr6 (53-358)||(19576967-19577283)
chr6 (53-111)||(19011603-19011661)
chr6 (53-102)||(19573615-19573663)
chr6 (53-145)||(11231437-11231540)
chr6 (53-102)||(23606970-23607018)
chr6 (50-102)||(20090426-20090477)
[»] chr7 (15 HSPs)
chr7 (34-111)||(11734975-11735051)
chr7 (50-115)||(6198780-6198845)
chr7 (34-111)||(18016965-18017041)
chr7 (36-115)||(15932224-15932302)
chr7 (50-111)||(30096798-30096859)
chr7 (36-111)||(6202041-6202115)
chr7 (34-111)||(9070427-9070502)
chr7 (54-111)||(9214531-9214588)
chr7 (53-115)||(44357133-44357196)
chr7 (34-145)||(9066472-9066591)
chr7 (50-111)||(11544858-11544919)
chr7 (54-113)||(43173367-43173426)
chr7 (57-113)||(44360259-44360316)
chr7 (50-111)||(11527453-11527514)
chr7 (66-115)||(23532450-23532499)
[»] chr5 (12 HSPs)
chr5 (52-115)||(20675683-20675746)
chr5 (34-112)||(20675356-20675433)
chr5 (34-114)||(20680102-20680181)
chr5 (50-111)||(8460293-8460354)
chr5 (34-111)||(20671134-20671210)
chr5 (50-111)||(27073814-27073875)
chr5 (36-111)||(15212795-15212869)
chr5 (54-111)||(19049640-19049697)
chr5 (50-115)||(20679881-20679940)
chr5 (36-115)||(40933319-40933399)
chr5 (36-102)||(40936714-40936779)
chr5 (54-111)||(37256953-37257011)
[»] chr4 (13 HSPs)
chr4 (36-111)||(27789164-27789238)
chr4 (34-113)||(28924652-28924730)
chr4 (34-102)||(12327939-12328007)
chr4 (35-111)||(30953279-30953354)
chr4 (34-115)||(22751832-22751911)
chr4 (50-112)||(7202731-7202793)
chr4 (50-115)||(20494702-20494768)
chr4 (53-111)||(28926768-28926826)
chr4 (34-111)||(22763110-22763185)
chr4 (36-111)||(23882472-23882546)
chr4 (50-111)||(20503323-20503385)
chr4 (57-102)||(12324759-12324804)
chr4 (66-145)||(23878854-23878943)
[»] scaffold0716 (1 HSPs)
scaffold0716 (53-115)||(2258-2320)
[»] scaffold0064 (1 HSPs)
scaffold0064 (50-111)||(25704-25765)
[»] scaffold0076 (2 HSPs)
scaffold0076 (35-115)||(36985-37064)
scaffold0076 (78-111)||(49913-49946)
[»] scaffold0320 (1 HSPs)
scaffold0320 (36-111)||(12138-12212)
[»] scaffold0179 (2 HSPs)
scaffold0179 (36-115)||(24949-25027)
scaffold0179 (36-112)||(27608-27683)
[»] scaffold0167 (1 HSPs)
scaffold0167 (36-111)||(10398-10472)
[»] chr1 (9 HSPs)
chr1 (53-144)||(20442638-20442739)
chr1 (53-111)||(12020169-12020227)
chr1 (54-144)||(24280843-24280944)
chr1 (53-118)||(20514499-20514564)
chr1 (54-115)||(33295706-33295767)
chr1 (58-111)||(18433322-18433375)
chr1 (53-115)||(19749646-19749709)
chr1 (54-102)||(15142606-15142653)
chr1 (66-115)||(15158017-15158067)
[»] scaffold0888 (1 HSPs)
scaffold0888 (53-115)||(4198-4260)
[»] scaffold0013 (3 HSPs)
scaffold0013 (53-115)||(135724-135786)
scaffold0013 (34-111)||(133405-133480)
scaffold0013 (34-111)||(137934-138009)
[»] scaffold0018 (1 HSPs)
scaffold0018 (36-115)||(194710-194788)
[»] scaffold0009 (1 HSPs)
scaffold0009 (51-111)||(96200-96260)
[»] scaffold0369 (1 HSPs)
scaffold0369 (36-101)||(7667-7730)
[»] scaffold0264 (1 HSPs)
scaffold0264 (50-115)||(12945-13011)
[»] scaffold0878 (1 HSPs)
scaffold0878 (50-101)||(4371-4421)
[»] scaffold0208 (1 HSPs)
scaffold0208 (50-115)||(1451-1517)
[»] scaffold0071 (1 HSPs)
scaffold0071 (50-115)||(44319-44384)
[»] scaffold0045 (1 HSPs)
scaffold0045 (53-115)||(78807-78870)
[»] scaffold0139 (1 HSPs)
scaffold0139 (66-101)||(2856-2891)
[»] scaffold0438 (1 HSPs)
scaffold0438 (50-98)||(3849-3897)
[»] scaffold0023 (1 HSPs)
scaffold0023 (56-111)||(150019-150074)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 26382216 - 26382556
Alignment:
Q  17 tactctcgagatcattcgcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttgt 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  26382216 tactctcgagatcattcacatccaataatcaattctaaaaccctagaatacgatgcttaatcctagaatctcttattgtactttttgcaagtacagttgt 26382315  T
Q  117 gggaaaaggtaaaactaacctagaccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgattcggaaacagccactgttttactgcgat 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  26382316 gggaaaaggtaaaactaacctagaccacatctcaaaaccctaattttgtgaatcgtaatcgaacatcactattcggaaacagccactgtttcactgcgat 26382415  T
Q  217 gtccaaccaaactgatcacggtaggcgtggaggtcgtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatgagat 316  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  26382416 atccaaccaaactgatcacggtaggcgt-gaggtcgtccactcatcgccttctttcaccaccatagttttcaccacgcctcctttcaaccatcatgagat 26382514  T
Q  317 cgttcctgcacggttgtttggtctgatcgttcagaaaaagct 358  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  26382515 cgttcctgcatggttgtttggtctggtcgttcagaaaaagct 26382556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 26384057 - 26384134
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||| ||||| ||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  26384057 gcatacaatattcagttctaaaaccctagaatatgattcttaaccctagaatcccctattgtactttttgcaagtaca 26384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 23692860 - 23692964
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagt----------tgtgggaaaaggtaaaactaaccta 138  Q
    ||||| ||||||  ||||||||||||| |||||||| |||| |||||||||| ||||||||||||          |||||||||||||||||||||||||    
T  23692860 tctaataccctattatacgattcttaaccctagaat-ccttgttgtacttttctgcaagtacagttggcgccgtctgtgggaaaaggtaaaactaaccta 23692958  T
Q  139 gaccac 144  Q
    ||||||    
T  23692959 gaccac 23692964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 2218595 - 2218520
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||||||| ||||  ||||||||||||||  |||| ||||| |||||||||| | |||||||||||||||    
T  2218595 gcatccaataatcaat-ctaat-ccctagaatacgatatttaaccctagtatcccttattatgctttttgcaagtaca 2218520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 1041431 - 1041356
Alignment:
Q  35 catccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||||| ||||||||||| |||||||| || || | ||| ||||||||||||  |||||||| |||||    
T  1041431 catccaataatcaat-ctaaaaccctaaaatacgatactgaaccttagtatcccttattgtgttttttgcaggtaca 1041356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 4876911 - 4876972
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    ||||||||||||| ||||||||||||| |||| ||| | ||||||||||||| ||||||||||    
T  4876911 tctaaaaccctagtatacgattcttaaccctaaaat-ctttattgtacttttatgcaagtaca 4876972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 386
Target Start/End: Original strand, 26382562 - 26382596
Alignment:
Q  352 aaaagcttcgatcaaaacatgtctcaggttatatg 386  Q
    |||||||||||||||||| ||||||||||||||||    
T  26382562 aaaagcttcgatcaaaacgtgtctcaggttatatg 26382596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 23696647 - 23696710
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagt 113  Q
    ||||| ||||||  ||||||||||||| |||||||| |||| |||||||||| ||||||||||||    
T  23696647 tctaagaccctaatatacgattcttaaccctagaat-ccttgttgtacttttctgcaagtacagt 23696710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 114 - 358
Target Start/End: Original strand, 14366334 - 14366578
Alignment:
Q  114 tgtgggaaaaggtaaaactaacctagaccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgattcggaaacagccactgttttactgc 213  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||   ||||||||||||||||||||||||||| ||||||||||||||| || ||    
T  14366334 tgtgggaaaaggtaaaactaacctagaccacatctcaaaaccccatttggctgaatcgtaatcgaacatcacgattcgaaaacagccactgtttcacagc 14366433  T
Q  214 gatgtccaaccaaactgatcacggtaggcgtggaggtcgtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatga 313  Q
     || ||||| || ||||| ||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |    
T  14366434 aatatccaatcatactgaacacggtaggtgtggaggtcgttgactcatcgccttctttcgccgccatagttttcaccacgcctcctttcaaccatcataa 14366533  T
Q  314 gatcgttcctgcacggttgtttggtctgatcgttcagaaaaagct 358  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  14366534 gatcgttcctgcacggctgtttggtccggtcgttcagaaaaagct 14366578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 17007898 - 17008018
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaa 123  Q
    |||||||||||||| | |||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||     
T  17007898 gcatccaataatcagt-ctaaaaccctaatatccgattcttaaccctagaatcccttattgtactttttgcaagtacagttggggccgtctgtgggaaac 17007996  T
Q  124 ggtaaaactaacctagaccaca 145  Q
    ||||||||||||||||||||||    
T  17007997 ggtaaaactaacctagaccaca 17008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 17541052 - 17540932
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaa 123  Q
    |||||||||||||| | |||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||     
T  17541052 gcatccaataatcagt-ctaaaaccctaatatccgattcttaaccctagaatcccttattgtactttttgcaagtacagttggggccgtctgtgggaaac 17540954  T
Q  124 ggtaaaactaacctagaccaca 145  Q
    ||||||||||||||||||||||    
T  17540953 ggtaaaactaacctagaccaca 17540932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 37718233 - 37718294
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  37718233 tctaaaaccttagtatacgattcttaaccctagaatcccctattgtactttttgcaagtaca 37718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 2370 - 2308
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  2370 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtacagttg 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 32231516 - 32231440
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||| ||||| |||||||||||  ||||||||||||| ||||||||| | |||||||||||||| |||||||    
T  32231516 gcatccaatagtcaat-ctaaaaccctaatatacgattcttaaccctagaatcacctattgtactttttggaagtaca 32231440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 753459 - 753517
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  753459 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtaca 753517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 31709031 - 31709096
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 115  Q
    ||||||||||||| ||||||||||||| |||||||| | ||||||||||||| ||||||||||||||    
T  31709031 tctaaaaccctagtatacgattcttaaccctagaat-ctttattgtacttttatgcaagtacagttg 31709096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 16083515 - 16083415
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagacca 143  Q
    ||||||||||||||||| ||||| ||||  |||||||||||| |||||| |||||| |||          ||||||||||||||||||||||||||||||    
T  16083515 aaaccctagaatacgatacttaaccctaatatcccttattgtgcttttttcaagtatagttggcgccgtctgtgggaaaaggtaaaactaacctagacca 16083416  T
Q  144 c 144  Q
    |    
T  16083415 c 16083415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 16084922 - 16084822
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagacca 143  Q
    ||||||||||||||||| ||||| ||||  |||||||||||| |||||| |||||| |||          ||||||||||||||||||||||||||||||    
T  16084922 aaaccctagaatacgatacttaaccctaatatcccttattgtgcttttttcaagtatagttggcgccgtctgtgggaaaaggtaaaactaacctagacca 16084823  T
Q  144 c 144  Q
    |    
T  16084822 c 16084822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 16086329 - 16086229
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagacca 143  Q
    ||||||||||||||||| ||||| ||||  |||||||||||| |||||| |||||| |||          ||||||||||||||||||||||||||||||    
T  16086329 aaaccctagaatacgatacttaaccctaatatcccttattgtgcttttttcaagtatagttggcgccgtctgtgggaaaaggtaaaactaacctagacca 16086230  T
Q  144 c 144  Q
    |    
T  16086229 c 16086229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 16087736 - 16087636
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagacca 143  Q
    ||||||||||||||||| ||||| ||||  |||||||||||| |||||| |||||| |||          ||||||||||||||||||||||||||||||    
T  16087736 aaaccctagaatacgatacttaaccctaatatcccttattgtgcttttttcaagtatagttggcgccgtctgtgggaaaaggtaaaactaacctagacca 16087637  T
Q  144 c 144  Q
    |    
T  16087636 c 16087636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 20134938 - 20134875
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  20134938 aaaaccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagttg 20134875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 17526633 - 17526559
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagta 109  Q
    |||||||||||||| | |||||| ||||  ||  ||||||||| |||||||||||||||||||| |||||||||||    
T  17526633 gcatccaataatcagt-ctaaaatcctaatatctgattcttaaccctagaatcccttattgtacattttgcaagta 17526559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 16077808 - 16077750
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 112  Q
    ||||||||||||||||| ||||| ||||| | |||||||||| |||||| |||||||||    
T  16077808 aaaccctagaatacgatacttaaccctagtaccccttattgtgcttttttcaagtacag 16077750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 21945924 - 21945979
Alignment:
Q  56 accctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  21945924 accctagtatacgattcttaaccctagaat-ccttattgtacttttctgcaagtaca 21945979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 20131809 - 20131752
Alignment:
Q  57 ccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagt 113  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  20131809 ccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagt 20131752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 31711251 - 31711312
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    ||||||||||||| ||||||||||||| |||| ||| | ||||||||||||| ||||||||||    
T  31711251 tctaaaaccctagtatacgattcttaaccctaaaat-ctttattgtacttttatgcaagtaca 31711312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 21408489 - 21408552
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    |||||||||  | ||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  21408489 aaaaccctaatagacgattcttaaccctagaat-ccttattgtactttttctgcaagtacagttg 21408552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 21802981 - 21803044
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    |||||||||  | ||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  21802981 aaaaccctaatagacgattcttaaccctagaat-ccttattgtactttttctgcaagtacagttg 21803044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 114 - 358
Target Start/End: Complemental strand, 8856891 - 8856647
Alignment:
Q  114 tgtgggaaaaggtaaaactaacctagaccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgattcggaaacagccactgttttactgc 213  Q
    |||||||||||||||||||||||||||||||| |||||||||| | |||  ||||||||||||||||||||||||||||||||| ||||||||| || ||    
T  8856891 tgtgggaaaaggtaaaactaacctagaccacatctcaaaaccccattttgctgaatcgtaatcgaacatcacgattcggaaacatccactgtttcacagc 8856792  T
Q  214 gatgtccaaccaaactgatcacggtaggcgtggaggtcgtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatga 313  Q
     || ||||| || ||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||| |||| ||||||||||||||||||| |    
T  8856791 aatatccaatcatactgatcacggtaggtgtggaggtcgtcgactcatcgccttctttcgcagccatagtttttaccacgcctcctttcaaccatcataa 8856692  T
Q  314 gatcgttcctgcacggttgtttggtctgatcgttcagaaaaagct 358  Q
    |||| || |||||||||||||||||| | ||||||||||||||||    
T  8856691 gatcttttctgcacggttgtttggtccggtcgttcagaaaaagct 8856647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 17593793 - 17593910
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagt----------tgtgggaaaa 123  Q
    |||||||||||| | |||||||||||  ||||||||||||| ||||||||||||||||||||||||  ||||||||||||          ||||||||||    
T  17593793 atccaataatcagt-ctaaaaccctaatatacgattcttaaccctagaatcccttattgtactttttctgcaagtacagttggcgccgtctgtgggaaaa 17593891  T
Q  124 ggtaaaactaacctagacc 142  Q
    |||||||||||||||||||    
T  17593892 ggtaaaactaacctagacc 17593910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 8368257 - 8368195
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 112  Q
    ||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8368257 tctaaaatcctaatatacgattcttaaacctagaatcccttattgtactttttgcaagtacag 8368195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 54110948 - 54111002
Alignment:
Q  55 aaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagta 109  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  54110948 aaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagta 54111002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 12206697 - 12206640
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12206697 aaaccctaatatacgattcttaaccctagaatcccttattgtactttttgcaagtaca 12206640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 15926721 - 15926660
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  15926721 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttttcaagtacagttg 15926660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 17601801 - 17601866
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    |||||||||||| | |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  17601801 atccaataatcagt-ctaaaaccctaatatacgattcttaaccctagaatcccttattgtacttttt 17601866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 12209109 - 12209048
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||  ||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  12209109 aaaccctaatatacgattcctaaccctagaatcccttattgtactttttgcaagtatagttg 12209048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 14433434 - 14433491
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||  |||||||||||||||||||||||| |||||| |||||||||||||||    
T  14433434 aaaccctagtttacgattcttaatcctagaatcccgtattgtgctttttgcaagtaca 14433491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 14566259 - 14566198
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||| ||| ||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  14566259 aaaccctagtatatgattcttagccctagaatctcttattgtactttttgcaagtacagttg 14566198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 16082800 - 16082863
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  16082800 aaaaccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagttg 16082863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 103405 - 103343
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 115  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  103405 aaaaccctaatatacgattcttaaccctagaat-ccttattgtacttttatgcaagtacagttg 103343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 19767679 - 19767616
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacag 112  Q
    ||||||||||||  ||| ||||||||| |||| ||||||||||||||||||| |||||||||||    
T  19767679 tctaaaaccctaagatatgattcttaaccctataatcccttattgtacttttctgcaagtacag 19767616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 15417854 - 15417919
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgta-ctttttgcaagtacagttg 115  Q
    ||||||||||||  ||||||||||||| |||||||| |||||||||| |||| ||||||||||||||    
T  15417854 tctaaaaccctaatatacgattcttaaccctagaat-ccttattgtacctttctgcaagtacagttg 15417919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 10807665 - 10807612
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaag 107  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||| |||||||||||    
T  10807665 aaaccctagaatacgatacttaaacctagtatcctttattgtgctttttgcaag 10807612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 10811788 - 10811739
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttg 103  Q
    ||||||||||||||||| ||||||||||| |||||| ||||| |||||||    
T  10811788 aaaccctagaatacgatacttaatcctagtatccctgattgtgctttttg 10811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 14429949 - 14430009
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    |||||||||  |||||||||||||| |||||||| ||||||| | |||||||||||||||||    
T  14429949 aaaccctagtttacgattcttaatcttagaatcctttattgtgc-ttttgcaagtacagttg 14430009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 14561075 - 14561015
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagtt 114  Q
    ||||||||| ||| ||||||||  |||| |||| ||||||||| |||||||||||||||||    
T  14561075 aaaccctagtatatgattcttagccctaaaatctcttattgtattttttgcaagtacagtt 14561015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 18556787 - 18556838
Alignment:
Q  66 acgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    ||||||||||| |||||||||| |||||||||||||  ||||||||||||||    
T  18556787 acgattcttaaccctagaatcctttattgtactttttctgcaagtacagttg 18556838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 94543 - 94485
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  94543 aaaaccctaatatacgattcttaaccctagaat-ccttattgtacttttatgcaagtaca 94485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 26907135 - 26907104
Alignment:
Q  114 tgtgggaaaaggtaaaactaacctagaccaca 145  Q
    ||||||||||||||||||||||||||||||||    
T  26907135 tgtgggaaaaggtaaaactaacctagaccaca 26907104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 16091976 - 16092024
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    |||||||||| ||||||||||||| ||||||||  |||||||||||||||    
T  16091976 aaaaccctagtatacgattcttaaccctagaat-tcttattgtacttttt 16092024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 26996802 - 26996737
Alignment:
Q  123 aggtaaaactaacctagaccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgat 188  Q
    |||||||||||| ||| |||||| |||||||||||  | || ||||||||||||  ||||||||||    
T  26996802 aggtaaaactaaactacaccacatctcaaaaccctgttattatgaatcgtaatccgacatcacgat 26996737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 53 - 358
Target Start/End: Complemental strand, 19577283 - 19576967
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt--gcaagtacagttg----------tgggaaaaggtaaaactaacctaga 140  Q
    |||||||||| ||||||||||||| |||||||||  ||||||||||||||  |||||||||||||          |||| || |||||||||||||||||    
T  19577283 aaaaccctagtatacgattcttaaccctagaatct-ttattgtactttttctgcaagtacagttggcgccgtctgtgggtaatggtaaaactaacctaga 19577185  T
Q  141 ccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgattcggaaacagccactgttttactgcgatgtccaaccaaactgatcacggtag 240  Q
    ||||| |||||||||| | ||   ||||||||||||||||||||||||||  ||||||||||||||| || || || ||||| || ||||| ||||||||    
T  19577184 ccacatctcaaaaccccatttggctgaatcgtaatcgaacatcacgattcaaaaacagccactgtttcacagcaatatccaatcatactgaacacggtag 19577085  T
Q  241 gcgtggaggtcgtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatgagatcgttcctgcacggttgtttggtct 340  Q
    | |||||||| ||  ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||     
T  19577084 gtgtggaggtggttgactcatcaccttctttcgccgccatagttttcaccacgcctcctttcaaccatcataagatctttcctgcacggctgtttggtcc 19576985  T
Q  341 gatcgttcagaaaaagct 358  Q
    | ||||||||||||||||    
T  19576984 ggtcgttcagaaaaagct 19576967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 19011661 - 19011603
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  19011661 aaaaccctagaatacgattcttaaccctagaat-ccttattgtacttttatgcaagtaca 19011603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 19573663 - 19573615
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  19573663 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttt 19573615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 11231437 - 11231540
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagt----------tgtgggaaaaggtaaaactaacctaga 140  Q
    |||||||||| ||||||||||||| |||| ||| | |||||||||||||  ||||||||||||          ||||||||||||||||| |||||||||    
T  11231437 aaaaccctagtatacgattcttaaccctaaaat-ctttattgtactttttatgcaagtacagttggcgtcgtctgtgggaaaaggtaaaattaacctaga 11231535  T
Q  141 ccaca 145  Q
    |||||    
T  11231536 ccaca 11231540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 23607018 - 23606970
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    |||||||||| ||||||||||||| |||||||| ||||| ||||||||||    
T  23607018 aaaaccctagcatacgattcttaaccctagaat-ccttactgtacttttt 23606970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 20090477 - 20090426
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    ||||||||||| | |||||||||| || |||||||| ||||||||||||||||    
T  20090477 tctaaaaccctcgcatacgattctcaaccctagaat-ccttattgtacttttt 20090426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 11734975 - 11735051
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  11734975 gcatccaataatcagttctaaaaccctagaatacgattcttaaccctagaatcccttattgtgcttttt-caagtaca 11735051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 6198780 - 6198845
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6198780 tctaaaaccctaatatacgattcttaatcttagaatcccttattgtactttttgcaagtacagttg 6198845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 18016965 - 18017041
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||||| | ||||||| || | |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18016965 gcatccaataatcagt-ctaaaactctggtatacaattcttaaccctagaatcccttattgtactttttgcaagtaca 18017041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 15932302 - 15932224
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    |||||||||||| | |||||||||||  ||||||||||||| |||||||||| ||| ||| |||||||||||||||||||    
T  15932302 atccaataatcagt-ctaaaaccctaatatacgattcttaaccctagaatcctttactgtgctttttgcaagtacagttg 15932224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 30096798 - 30096859
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||  ||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  30096798 tctaaaaccctaatatacgattcttaaccctagaatctcttatcgtactttttgcaagtaca 30096859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 6202041 - 6202115
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||| | |||||||||||  ||||||||| ||| |||| |||| ||||||||||||||||||||||||    
T  6202041 atccaataatcagt-ctaaaaccctaatatacgattcataaccctataatctcttattgtactttttgcaagtaca 6202115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 9070427 - 9070502
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||||||    ||||||||||||||||| |||| || ||| |||||||||||| |||||||||||||||    
T  9070427 gcatccaataatcaatat--aaaccctagaatacgatacttagtcatagtatcccttattgtgctttttgcaagtaca 9070502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 9214588 - 9214531
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||  |||||||||||| ||||||||| |||||||| |||||||||||||||    
T  9214588 aaaccctagtttacgattcttaaccctagaatctcttattgtgctttttgcaagtaca 9214531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 44357133 - 44357196
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  44357133 aaaaccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagttg 44357196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 9066472 - 9066591
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagtt----------gtgggaaaa 123  Q
    |||||||||||||||| ||||| |||||||||||||| ||||  ||| | || |||| |||| ||||||||||||||||||          ||||||||     
T  9066472 gcatccaataatcaat-ctaaa-ccctagaatacgatacttagccctggtattccttgttgtgctttttgcaagtacagttggcgcagtccgtgggaaac 9066569  T
Q  124 ggtaaaactaacctagaccaca 145  Q
    ||||||||||||||||||||||    
T  9066570 ggtaaaactaacctagaccaca 9066591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 11544858 - 11544919
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    ||||||| ||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  11544858 tctaaaatcctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 11544919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 43173426 - 43173367
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt 113  Q
    ||||||||||||||||| ||||| | ||  |||||||||||| |||||||| ||||||||    
T  43173426 aaaccctagaatacgatacttaaccataatatcccttattgtgctttttgctagtacagt 43173367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 44360259 - 44360316
Alignment:
Q  57 ccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagt 113  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  44360259 ccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagt 44360316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 11527453 - 11527514
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    ||||||||||||| |||||||||||||  ||| ||| ||||||||||||||| ||||||||||    
T  11527453 tctaaaaccctagtatacgattcttaacactataat-ccttattgtacttttgtgcaagtaca 11527514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 23532499 - 23532450
Alignment:
Q  66 acgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 115  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  23532499 acgattcttaaccctagaat-ccttattgtacttttctgcaagtacagttg 23532450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 20675746 - 20675683
Alignment:
Q  52 taaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20675746 taaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagtacagttg 20675683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 20675433 - 20675356
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 112  Q
    |||||||||||| ||  |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20675433 gcatccaataat-aagactaaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagtacag 20675356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 20680181 - 20680102
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagtt 114  Q
    |||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  20680181 gcatccaataatcagt-ctaaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgctagtgcagtt 20680102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 8460293 - 8460354
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  8460293 tctaaaaccctaatatacgattcttaaccctagaataccttattgtactttttgcaagtaca 8460354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 20671210 - 20671134
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||||| | |||| ||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||    
T  20671210 gcatccaataatcagt-ctaagaccctagtatacgattcttaaccttagaatccattattgtactttttgcaagtaca 20671134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 27073814 - 27073875
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||| ||||| |||||||| |||| | ||||||||||||||||||||||||||||||||    
T  27073814 tctaaaaacctagtatacgatttttaaccttagaatcccttattgtactttttgcaagtaca 27073875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 15212869 - 15212795
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||||| |||  ||||||  | ||||||||| | ||||||||||||||||||||||||||||||||||    
T  15212869 atccaataatcaat-ctactaccctaatacacgattctttaccctagaatcccttattgtactttttgcaagtaca 15212795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 19049697 - 19049640
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||||||| ||||  ||||| |||||||||||| |||||||||||||||    
T  19049697 aaaccctagaatacgatacttagccctagtatcccttattgtgctttttgcaagtaca 19049640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 20679940 - 20679881
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||||||| ||||||||||||| ||      ||||||||||||||||||||||||||||||    
T  20679940 tctaaaaccctagtatacgattcttaaccc------cccttattgtactttttgcaagtacagttg 20679881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 40933319 - 40933399
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    |||||||||||| | |||||||||||  |||| |||||||| |||| ||| |||||||||||||||  ||||||||||||||    
T  40933319 atccaataatcagt-ctaaaaccctaacatactattcttaaccctataattccttattgtactttttctgcaagtacagttg 40933399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 40936714 - 40936779
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    |||||||||||| | |||||||||||  |||| |||||||| |||| ||||||||||||||||||||    
T  40936714 atccaataatcagt-ctaaaaccctaatatactattcttaaccctataatcccttattgtacttttt 40936779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 37257011 - 37256953
Alignment:
Q  54 aaaccctagaatacgattcttaatcc-tagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||  ||||||||||||| || ||||||| | ||||||||||||||||||||||    
T  37257011 aaaccctaatatacgattcttaacccctagaatcacctattgtactttttgcaagtaca 37256953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 27789164 - 27789238
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27789164 atccaataatcagt-ctaaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagtaca 27789238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 28924730 - 28924652
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt 113  Q
    |||||||||||||| | |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  28924730 gcatccaataatcagt-ctaaaaccctagtatacgattcttaaccccagaatcccttattgtactttttgcaagtacagt 28924652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 12327939 - 12328007
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    |||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12327939 gcattcaataatcagttatgaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 12328007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 30953279 - 30953354
Alignment:
Q  35 catccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||| |  ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30953279 catccaataatcagta-taaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagtaca 30953354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 22751832 - 22751911
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    |||||||||||| || ||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  22751832 gcatccaataat-aagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttttcaagtacagttg 22751911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 7202793 - 7202731
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 112  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7202793 tctaaaaccctaatatacgattcttaaccctagaatcccttattgtgctttttgcaagtacag 7202731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 20494702 - 20494768
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcc-tagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||||||  ||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  20494702 tctaaaaccctaatatacgattcttaaaccctagaatcccttattgtactttttgcaagtacagttg 20494768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 28926826 - 28926768
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  28926826 aaaaccctagtatacgattcttaatcatagaatcccttattgaactttttgcaagtaca 28926768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 22763110 - 22763185
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||||| | |||||| ||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  22763110 gcatccaataatcagt-ctaaaatcctagtatacgattcttaaccctagaat-ccttattgtacttttttcaagtaca 22763185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 23882472 - 23882546
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||| ||||| |||||||||||  ||||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  23882472 atccaatagtcaat-ctaaaaccctaatatacgattcttaaccctagaatctcttattgtgctttttgcaaataca 23882546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 20503323 - 20503385
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcct-agaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||  |||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  20503323 tctaaaaccctaatatacgattattaaaccttagaatcccttattgtactttttgcaagtaca 20503385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 12324759 - 12324804
Alignment:
Q  57 ccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||||    
T  12324759 ccctagaatacaattcttaaccctagaatcccttactgtacttttt 12324804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 23878854 - 23878943
Alignment:
Q  66 acgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagaccaca 145  Q
    |||||||||||  |||||||| |||||||| |||||||||||||| ||          ||||||||| ||||||||||||||||||||||    
T  23878854 acgattcttaacactagaatctcttattgtgctttttgcaagtaccgttggcaccgtctgtgggaaacggtaaaactaacctagaccaca 23878943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 2258 - 2320
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2258 aaaaccctaatatacgattcttaaccctagaatcccttattgtactttttgcaagtacagttg 2320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 25765 - 25704
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  25765 tctaaaaccctagtatacgattcttaaccctagaatcacttattgtactttttgcaagtaca 25704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 36985 - 37064
Alignment:
Q  35 catccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||||||| | ||||| ||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36985 catccaataatcagt-ctaaagcccgaatatacgattcttaaccctagaatcccttattgtactttttgcaagtacagttg 37064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 49913 - 49946
Alignment:
Q  78 cctagaatcccttattgtactttttgcaagtaca 111  Q
    ||||||||||||||||||||||||||||||||||    
T  49913 cctagaatcccttattgtactttttgcaagtaca 49946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 12138 - 12212
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||| | |||||||||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  12138 atccaataatcagt-ctaaaaccctaatatatgattcttaaccctagaatcccttattgtactttttgcaagtaca 12212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 24949 - 25027
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    |||||||||||| | |||||||||||  ||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  24949 atccaataatcagt-ctaaaaccctaagatacgtttcttaaccctagaatcctttattgtactttttgcaagtacagttg 25027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 27608 - 27683
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 112  Q
    |||||||||||||| |||||||||||  ||||| ||||||| |||||||||| ||| ||||||||||||||||||||    
T  27608 atccaataatcaat-ctaaaaccctaatatacgtttcttaaccctagaatcctttactgtactttttgcaagtacag 27683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 10472 - 10398
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||| | |||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10472 atccaataatcagt-ctaaaaccttaatatacgattcttaaccctagaatcccttattgtactttttgcaagtaca 10398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 20442638 - 20442739
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacag----------ttgtgggaaaaggtaaaactaacctagac 141  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||          |||||||||||||||||||||||||||||    
T  20442638 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttatgcaagtacagttggcgccgtttgtgggaaaaggtaaaactaacctagac 20442736  T
Q  142 cac 144  Q
    |||    
T  20442737 cac 20442739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 12020227 - 12020169
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  12020227 aaaaccatagaatacgattcttaaccctagaat-ccttattgtacttttctgcaagtaca 12020169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 24280944 - 24280843
Alignment:
Q  54 aaaccctagaata-cgattcttaatcctagaatcccttattgtactttt-tgcaagtacagt----------tgtgggaaaaggtaaaactaacctagac 141  Q
    ||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||||    
T  24280944 aaaccctagtataacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaaggtaaaactaacctagac 24280846  T
Q  142 cac 144  Q
    |||    
T  24280845 cac 24280843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 20514499 - 20514564
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttgtgg 118  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||    
T  20514499 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttatgcaagtatagtagtgg 20514564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 33295706 - 33295767
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||||||||||| || || ||||| ||||  |||||| |||||||||||||||||||    
T  33295706 aaaccctagaatacgatactgaaccctagtatcctctattgtgctttttgcaagtacagttg 33295767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 18433322 - 18433375
Alignment:
Q  58 cctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  18433322 cctagtatacgattcttaaccctagaat-ccttattgtacttttctgcaagtaca 18433375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 19749646 - 19749709
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    |||||||||  | ||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  19749646 aaaaccctaatagacgattcttaaccctagaat-ccttattgtactttttctgcaagtacagttg 19749709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 15142653 - 15142606
Alignment:
Q  54 aaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 102  Q
    ||||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  15142653 aaaccctaatatacgattcttaaccctagaat-ccttattgtacttttt 15142606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 15158067 - 15158017
Alignment:
Q  66 acgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    ||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  15158067 acgattcttaaccctagaat-ccttattgtactttttctgcaagtacagttg 15158017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 4198 - 4260
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    ||||||||| |||| ||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  4198 aaaaccctaaaataagattcttaaccctagaatcacctattgtactttttgcaagtacagttg 4260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 135786 - 135724
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 115  Q
    |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  135786 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtacagttg 135724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 133480 - 133405
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||||| ||| |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  133480 gcatccaataatca-ttc-aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtaca 133405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 138009 - 137934
Alignment:
Q  34 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||||| ||| |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  138009 gcatccaataatca-ttc-aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtaca 137934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 194710 - 194788
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 115  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||    
T  194710 atccaataatcagt-ctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttatgcgagtacagttg 194788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 96260 - 96200
Alignment:
Q  51 ctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 111  Q
    |||||||||||  ||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  96260 ctaaaaccctaatatacgattcttaaccctagaatttcttattgtactttttgcaagtaca 96200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 7667 - 7730
Alignment:
Q  36 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt 101  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  7667 atccaataatcagt-ctaaaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 7730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 13011 - 12945
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtac--tttttgcaagtacagttg 115  Q
    ||||||||||||| |||||||||| || |||||||| |||||||||||  ||||||||||||||||||    
T  13011 tctaaaaccctagcatacgattctcaaccctagaat-ccttattgtactttttttgcaagtacagttg 12945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 4371 - 4421
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt 101  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  4371 tctaaaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 4421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 1517 - 1451
Alignment:
Q  50 tctaaaaccctagaata-cgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 115  Q
    ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  1517 tctaaaaccctagtataacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttg 1451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 44384 - 44319
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgta-ctttttgcaagtacagttg 115  Q
    ||||||||||||  ||||||||||||| |||||||| |||||||||| |||| ||||||||||||||    
T  44384 tctaaaaccctaatatacgattcttaaccctagaat-ccttattgtacctttctgcaagtacagttg 44319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 78807 - 78870
Alignment:
Q  53 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 115  Q
    |||||||||| ||||||||||||| |||||||| ||||| |||||||||  ||||||||||||||    
T  78807 aaaaccctagtatacgattcttaaccctagaat-ccttactgtactttttgtgcaagtacagttg 78870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 2891 - 2856
Alignment:
Q  66 acgattcttaatcctagaatcccttattgtactttt 101  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2891 acgattcttaaccctagaatcccttattgtactttt 2856  T

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Target: scaffold0438 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 3897 - 3849
Alignment:
Q  50 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtact 98  Q
    ||||||||||||  ||||||||||||| | |||||||| ||||||||||    
T  3897 tctaaaaccctaatatacgattcttaaccttagaatcctttattgtact 3849  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 150019 - 150074
Alignment:
Q  56 accctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 111  Q
    ||||||| ||||||||||||| | |||||| ||||||||||||||| ||||||||||    
T  150019 accctagtatacgattcttaaccatagaat-ccttattgtacttttatgcaagtaca 150074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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