View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9031_high_10 (Length: 320)
Name: NF9031_high_10
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 36170097 - 36170398
Alignment:
| Q |
1 |
tcaagaaatcaaacaatgaagtggagtggaagaaaaccttcttcaggttcttcttcaaaaccttccttcatctctcatgtatcctctttttcatggctgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36170097 |
tcaagaaatcaaacaatgaagtggagtggaagaaaaccttcttcagcttcttcttcaaaaccttccttcatctctcatgtatcctctttttcatggctgt |
36170196 |
T |
|
| Q |
101 |
taaagttcaagcaaatgaaaatcaactcagactcagaagctaaatccgaaaagctgatgcagaactccccgtctgatggttcatcacaatttccttgtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36170197 |
taaagttcaagcaaatgaaaatcaactcagactcagaagcaaaatccgaaaagctgatgcagaactccccgtctgatggttcatcacaatttccttgtgg |
36170296 |
T |
|
| Q |
201 |
gaatagaggcaggttttatggaggtaatgatgatgcattctggagattgtcatttggtgaagagtttactaatgaccaaaagaagaaaagtaaagatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36170297 |
gaatagaggcaggttttatggaggtaatgatgatgcattctggagattgtcatttggtgaagagtttactaatgaccaaaagaagaaaagtaaagatatt |
36170396 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
|
|
| T |
36170397 |
ct |
36170398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University