View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_high_2 (Length: 459)
Name: NF9031_high_2
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 43195193 - 43195635
Alignment:
| Q |
18 |
ccaccaactccatagtgagtggctacagtactaatccaagttctttttcctcagatttcgccactgctatgataaagatgggtgatattagtcctctcac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43195193 |
ccaccaactccatagtgagtggctacagtactaatccaagttctttttcctcagatttcgccactgctatgataaagatgggtgatattagtcctctcac |
43195292 |
T |
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| Q |
118 |
cggatcaaatggagagatcaggaagaattgtagaaaacctaactaagagtcaacggtcctagttatacacatacaacaaaattgtgttatatacatgtgt |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43195293 |
cggatcaaatggagagatcagaaagaattgtagaaaacctaactaagagttaacggtcctagttatacacatacaacaaaattgtgttatatacatgtgt |
43195392 |
T |
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| Q |
218 |
gttgtgcgcataataag-ttgttaaacatgttttcattgtctatttgattttgtgtgctttggagggttgtgta--tgtgtactgtcttacttttattgt |
314 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43195393 |
gttgtgcgcataataagtttgttaaacatgttttcattgtctatttgattttgtgtgctttggagggttgtgtaagtgtgtactgtcttacttttattgt |
43195492 |
T |
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| Q |
315 |
g-----nnnnnnngtttcatttacaaaattgtaagaaaggagattggtttcatgatctacaagtacgtttgtgattttaatttataaaaaggggttaagc |
409 |
Q |
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| T |
43195493 |
gttttttttttttgtttcatttacaaaattgtaagaaaggagattggtttcatgatctacaagtacgtttgtgattttaatttataaaaaggggttaagc |
43195592 |
T |
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| Q |
410 |
ttttctatttgcttcttagttatgtttaattgtctgtgctcct |
452 |
Q |
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| T |
43195593 |
ttttctatttgcttcttagttatgtttaattgtttgtgttcct |
43195635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 43180838 - 43180983
Alignment:
| Q |
18 |
ccaccaactccatagtgagtggctacagtactaatccaagttctttttcctcagatttcgccactgctatgataaagatgggtgatattagtcctctcac |
117 |
Q |
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|||||||||| ||||||||||| || ||||||| ||||| ||||||||||| ||||| ||| |||||||||| |||||||| |||||| |||||||| |
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| T |
43180838 |
ccaccaactcaatagtgagtggttatagtactagcccaagctctttttcctctgattttgccgctgctatgatcaagatgggaaatattaaacctctcac |
43180937 |
T |
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| Q |
118 |
cggatcaaatggagagatcaggaagaattgtagaaaacctaactaa |
163 |
Q |
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| T |
43180938 |
cggatcaaatggagagattaggaagaactgtagaaaaaccaactaa |
43180983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 43190163 - 43190308
Alignment:
| Q |
18 |
ccaccaactccatagtgagtggctacagtactaatccaagttctttttcctcagatttcgccactgctatgataaagatgggtgatattagtcctctcac |
117 |
Q |
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|||| ||||| |||||||||||||| || ||||| || ||||||| ||| ||||| |||||||||||||| |||||||| ||||||| || ||||| |
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| T |
43190163 |
ccactaactcaatagtgagtggctattttaataatcaaaactcttttttctctgattttgccactgctatgatcaagatgggagatattaagccactcac |
43190262 |
T |
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| Q |
118 |
cggatcaaatggagagatcaggaagaattgtagaaaacctaactaa |
163 |
Q |
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| T |
43190263 |
tggatcaaatggagagattagaaagaactgcagaaaacccaactaa |
43190308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 43181157 - 43181234
Alignment:
| Q |
325 |
ttcatttacaaaattgtaagaaaggagattggtttcatgatctacaagtacgtttgtgattttaatttataaaaaggg |
402 |
Q |
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|||||||||||||||||||||| ||| | |||| || ||||||||| | ||||||||||||||||||||||||| |
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| T |
43181157 |
ttcatttacaaaattgtaagaacggaagctagtttgataatctacaaggtcaattgtgattttaatttataaaaaggg |
43181234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 36191281 - 36191365
Alignment:
| Q |
51 |
atccaagttctttttcctcagatttcgccactgctatgataaagatgggtgatattagtcctctcaccggatcaaatggagagat |
135 |
Q |
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||||||| ||||||||||| ||||||| ||| || ||||| |||||||| || |||||||| |||||||| |||||||||||||| |
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| T |
36191281 |
atccaagctctttttcctctgatttcgtcaccgccatgatcaagatgggagacattagtcccctcaccggttcaaatggagagat |
36191365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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