View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_high_4 (Length: 435)
Name: NF9031_high_4
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 86 - 423
Target Start/End: Complemental strand, 55161747 - 55161413
Alignment:
| Q |
86 |
ggaaggaaggagcgtaaacgtaccagaaaaagaatagatagtgtcgtaagtaagattatagaggacaagtgaagaaggcatgttgatgttggtgttgtta |
185 |
Q |
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| T |
55161747 |
ggaaggaaggagcgtaaacgtaccagaaaaagaatagatagtgtcgtaagtaagattatagaggacaagtgaagaaggcatgttgatgttggtgttgtta |
55161648 |
T |
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| Q |
186 |
acagcattacccttgtccttgatattgaaaactcctcctccgtaaagtggcttctctggatgctctttgcactgtc-aaagtctcaactatgcatgtcag |
284 |
Q |
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| T |
55161647 |
acagcattacccttgtccttgatattgaaaactcctcctccgtaaagtggcttctctggatgctctttgcactgtcaaaagtctcaactatgcatgtcag |
55161548 |
T |
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| Q |
285 |
ttctatatatgacatttgtctgtcatatagaagaatactacaa-ttataagttacaaaacaacaacaacatgaattgaattgaattgaattgaatattac |
383 |
Q |
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| T |
55161547 |
ttctatatatgacatttgtctgtcatatagaagaatactacaagttataagttacaaaacaacaacaaca-----tgaattgaattgaattgaatattac |
55161453 |
T |
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| Q |
384 |
cacctgagtgtaagcagtaaagtcatataggggtccatct |
423 |
Q |
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| T |
55161452 |
cacctgagtgtaagcagtaaagtcatataggggtccatct |
55161413 |
T |
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