View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_high_7 (Length: 423)
Name: NF9031_high_7
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_high_7 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 22 - 332
Target Start/End: Original strand, 8762934 - 8763244
Alignment:
| Q |
22 |
tattataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacttgctacattttctctggtcaagtttggtatattcatgatctc |
121 |
Q |
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| T |
8762934 |
tattataatattattgaaatatatgatgtaaatttagaagaaaaacctgtaagtgacttgctacattttctctggtcaagtttggtatattcatgatctc |
8763033 |
T |
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| Q |
122 |
cagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactgattagaattaaaaagcctttcataagaaaa |
221 |
Q |
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| T |
8763034 |
cagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactaattagatttaaaaagcctttcataagaaaa |
8763133 |
T |
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| Q |
222 |
atatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtgtccaaacaagtttttgtttcttaa |
321 |
Q |
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| T |
8763134 |
atatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtgtccaaacaagtttttgtttcttaa |
8763233 |
T |
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| Q |
322 |
caacttgaata |
332 |
Q |
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| T |
8763234 |
caacttgaata |
8763244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 8789411 - 8789577
Alignment:
| Q |
20 |
gatattataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacttgctacattttctctggtcaagtttggtatattcatgatc |
119 |
Q |
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| T |
8789411 |
gatattataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacctgctacattttctctggtcaagtttggtatattcatgatc |
8789510 |
T |
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| Q |
120 |
tccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
186 |
Q |
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| T |
8789511 |
tccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
8789577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 8918 - 8819
Alignment:
| Q |
50 |
taaattgagaagaaaaacctgtaagtgacttgctacattttctctggtcaagtttggtatattcatgatctccagaattttctttggaacagcctctgaa |
149 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||| || |||||||| | |||||| ||||||| |||||||||||| ||| | |||||| |
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| T |
8918 |
taaattgagaagaaaaacctgtaaatgactggctacattttctcttgttaagtttggaacattcattatctccaaaattttctttggcacaacatctgaa |
8819 |
T |
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