View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_high_9 (Length: 328)
Name: NF9031_high_9
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 5014507 - 5014185
Alignment:
| Q |
1 |
tgcttcaacttgattaaggtaataaaaacatcatctttaacatctttgcatg-ttgttgttgtggtagttttgtgtataaacttgtaagatatgattaat |
99 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5014507 |
tgcttcaacttgtttaaggtaataaaaacatcatctttaagctctttgcatgcttgttgttgtggtagttttgtgtataaacttgtaagatatgattaat |
5014408 |
T |
|
| Q |
100 |
atgtaaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtaccaaacaataatataatgttgacatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5014407 |
atgtaaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtaccaaacaataatataatgttgacatt |
5014308 |
T |
|
| Q |
200 |
tttcatnnnnnnnncacttagggtttgatttgtgtataatcgtgagtgtc----------taatggtgtttatggttatgttttgatcagatggaagcaa |
289 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5014307 |
tttcat-aaaaaaacacttagggtttgatttgtgtataaccgtgagtgtctaatggtatttaatggtgtttatggttatgttttgatcagatggaagcaa |
5014209 |
T |
|
| Q |
290 |
aagcaactttgattttgcatcatg |
313 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
5014208 |
aggcaactttgattttgcatcatg |
5014185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 41779936 - 41779614
Alignment:
| Q |
1 |
tgcttcaacttgattaaggtaataaaaacatcatctttaacatctttgcatg-ttgttgttgtggtagttttgtgtataaacttgtaagatatgattaat |
99 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41779936 |
tgcttcaacttgtttaaggtaataaaaacatcatctttaagctctttgcatgcttgttgttgtggtagttttgtgtataaacttgtaagatatgattaat |
41779837 |
T |
|
| Q |
100 |
atgtaaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtaccaaacaataatataatgttgacatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41779836 |
atgtaaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtaccaaacaataatataatgttgacatt |
41779737 |
T |
|
| Q |
200 |
tttcatnnnnnnnncacttagggtttgatttgtgtataatcgtgagtgtc----------taatggtgtttatggttatgttttgatcagatggaagcaa |
289 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41779736 |
tttcat-aaaaaaacacttagggtttgatttgtgtataaccgtgagtgtctaatggtttttaatggtgtttatggttatgttttgatcagatggaagcaa |
41779638 |
T |
|
| Q |
290 |
aagcaactttgattttgcatcatg |
313 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
41779637 |
aggcaactttgattttgcatcatg |
41779614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 35298935 - 35299246
Alignment:
| Q |
1 |
tgcttcaacttgattaaggtaataaaaacatcatctttaacatctttgcatgttgttgttgtggtagttttgtgtataaacttgtaagatatgattaata |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
35298935 |
tgcttcaacttgtttaaggtaataaaaatataatctttaagctctttgcatgctgttgttgtggttgttttgtgtgtaaacttgtaagatatgattaata |
35299034 |
T |
|
| Q |
101 |
tgtaaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtaccaaacaataatataatgttgacattt |
200 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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| T |
35299035 |
tgta---------aaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtacaaaacaattatataatcttgacattt |
35299125 |
T |
|
| Q |
201 |
ttcatnnnnnnnncacttagggtttgatttgtgtataatcgtgagtgtc----------taatggtgtttatggttatgttttgatcagatggaagcaaa |
290 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35299126 |
ttcat--aaaaaacacttagggtttgatttgtgtataaccgtgagtgtctaatggtgtttaatggtgtttatggttatgttttgatcagatggaagcaaa |
35299223 |
T |
|
| Q |
291 |
agcaactttgattttgcatcatg |
313 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
35299224 |
ggcaactttgattttgcatcatg |
35299246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 33061938 - 33062091
Alignment:
| Q |
1 |
tgcttcaacttgattaaggtaataaaaacatcatctttaacatctttgcatgttgttgttgtggtagttttgtgtataaacttgtaagatatgattaata |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
33061938 |
tgcttcaacttgtttaaggtaataaaaacatcatttttaagctctttgcatgctgttgttgtg-----------tataaacttgtaagatatgattaat- |
33062025 |
T |
|
| Q |
101 |
tgtaaaatgtgtaaaataaagtggtaatatgaagatgattagctttgaacattatttattgtagtttattgtac |
174 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33062026 |
--------gtgtaaaataaagtgttaatatgaagatgattagctttgaaaattatttattgtagtttattgtac |
33062091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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