View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9031_low_1 (Length: 1132)

Name: NF9031_low_1
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9031_low_1
NF9031_low_1
[»] chr4 (19 HSPs)
chr4 (45-1011)||(22054918-22055899)
chr4 (586-667)||(17729420-17729500)
chr4 (592-667)||(23225859-23225933)
chr4 (586-669)||(43722757-43722839)
chr4 (586-664)||(8027384-8027461)
chr4 (587-669)||(8415483-8415564)
chr4 (590-667)||(4916149-4916225)
chr4 (589-669)||(21318243-21318322)
chr4 (586-633)||(18903745-18903791)
chr4 (586-669)||(54500561-54500643)
chr4 (586-668)||(7230273-7230354)
chr4 (614-668)||(8494980-8495034)
chr4 (586-668)||(11949750-11949831)
chr4 (586-668)||(42845018-42845099)
chr4 (589-667)||(43034332-43034409)
chr4 (621-662)||(5179909-5179950)
chr4 (611-668)||(5360291-5360348)
chr4 (611-668)||(33900735-33900792)
chr4 (617-666)||(39842029-39842078)
[»] chr8 (8 HSPs)
chr8 (586-667)||(44293569-44293649)
chr8 (586-668)||(29376894-29376975)
chr8 (599-668)||(33373752-33373820)
chr8 (586-668)||(7996933-7997014)
chr8 (609-663)||(15188897-15188951)
chr8 (586-667)||(18533663-18533743)
chr8 (586-667)||(19163523-19163603)
chr8 (599-668)||(39821877-39821945)
[»] chr3 (15 HSPs)
chr3 (586-667)||(7464478-7464558)
chr3 (586-669)||(8127455-8127537)
chr3 (586-664)||(2186414-2186491)
chr3 (609-668)||(17588355-17588414)
chr3 (590-664)||(41442918-41442990)
chr3 (586-662)||(10922295-10922370)
chr3 (586-661)||(25441487-25441561)
chr3 (617-668)||(53633634-53633685)
chr3 (586-668)||(1149056-1149137)
chr3 (586-668)||(21160045-21160125)
chr3 (586-668)||(33633305-33633386)
chr3 (586-668)||(51882187-51882268)
chr3 (628-662)||(54897319-54897353)
chr3 (621-666)||(11436502-11436547)
chr3 (636-669)||(51250269-51250302)
[»] chr5 (14 HSPs)
chr5 (587-667)||(36321481-36321561)
chr5 (586-662)||(11647196-11647271)
chr5 (586-664)||(11318182-11318260)
chr5 (586-662)||(16579361-16579436)
chr5 (586-633)||(1809072-1809118)
chr5 (609-668)||(3389155-3389214)
chr5 (589-668)||(6489000-6489078)
chr5 (586-668)||(5614758-5614838)
chr5 (589-667)||(15889405-15889482)
chr5 (589-667)||(29695009-29695086)
chr5 (586-668)||(37932323-37932404)
chr5 (615-668)||(689540-689593)
chr5 (586-663)||(11310438-11310514)
chr5 (636-669)||(40837939-40837972)
[»] chr1 (13 HSPs)
chr1 (586-667)||(8269355-8269435)
chr1 (586-670)||(14768797-14768881)
chr1 (617-669)||(30678830-30678882)
chr1 (610-670)||(52267755-52267815)
chr1 (586-669)||(1091171-1091253)
chr1 (601-664)||(3509942-3510005)
chr1 (586-668)||(6219850-6219930)
chr1 (621-668)||(31061924-31061971)
chr1 (586-668)||(1794589-1794670)
chr1 (618-668)||(18521240-18521290)
chr1 (609-667)||(30798756-30798814)
chr1 (586-663)||(29042535-29042611)
chr1 (586-667)||(33153867-33153947)
[»] chr7 (11 HSPs)
chr7 (586-669)||(7388026-7388108)
chr7 (586-668)||(37930037-37930118)
chr7 (590-667)||(5526719-5526795)
chr7 (592-669)||(34448603-34448679)
chr7 (589-668)||(5579686-5579764)
chr7 (589-668)||(27833391-27833469)
chr7 (609-667)||(7872757-7872815)
chr7 (637-667)||(35571970-35572000)
chr7 (589-667)||(40187626-40187703)
chr7 (586-664)||(44651498-44651575)
chr7 (595-668)||(46220947-46221018)
[»] chr6 (9 HSPs)
chr6 (586-668)||(9977050-9977131)
chr6 (588-668)||(788859-788938)
chr6 (617-668)||(9987074-9987125)
chr6 (621-668)||(20208112-20208159)
chr6 (621-668)||(22102135-22102182)
chr6 (586-668)||(8138445-8138526)
chr6 (592-666)||(20744133-20744206)
chr6 (589-667)||(27834333-27834410)
chr6 (617-662)||(10497169-10497214)
[»] chr2 (10 HSPs)
chr2 (589-667)||(24592836-24592913)
chr2 (586-664)||(31815874-31815951)
chr2 (586-667)||(2256965-2257045)
chr2 (589-669)||(25561987-25562066)
chr2 (586-661)||(18324881-18324955)
chr2 (586-665)||(27412823-27412901)
chr2 (599-669)||(5676731-5676800)
chr2 (593-659)||(22359007-22359072)
chr2 (586-667)||(9383196-9383276)
chr2 (586-667)||(29798504-29798584)
[»] scaffold0050 (1 HSPs)
scaffold0050 (586-666)||(53367-53446)
[»] scaffold0262 (1 HSPs)
scaffold0262 (586-667)||(15917-15997)


Alignment Details
Target: chr4 (Bit Score: 765; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 45 - 1011
Target Start/End: Complemental strand, 22055899 - 22054918
Alignment:
Q  45 tgacttgtttcatcttcaagttctttgttttaagccttctttgtagatataatttgtttagggttttgatggctatgaaagagtgtgaatgatgaaatgt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22055899 tgacttgtttcatcttcaagttctttgttttaagccttctttgtagatataattt-tttagggttttgatggctatgaaagagtgtgaatgatgaaatgt 22055801  T
Q  145 gtgtttgatgattggggagtgtggaagagaggggttataaagaggttgattaatgaaatgataggttggtgaaatatattatggttgtgagattaatttg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22055800 gtgtttgatgattggggagtgtggaagagaggggttataaagaggttgattaatgaaatgataggttggtgaaatatattatggttgtgagattaatttg 22055701  T
Q  245 tagctgtgttatgtgaaggtggtatatcccatctatcatggagaataaagatcttttatctaattatttttaatatcgttggacaaaggagaatgacatt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22055700 tagctgtgttatgtgaaggtggtatatcccatctatcatggagaataaagatcttttatctaattatttttaatatcgttggacaaaggagaatgacatt 22055601  T
Q  345 acattgagaggttattgaggggacataaaaatatcaaggtgcagctgcaaatttaatgcatacatctataataaggtgtaatgtcaagcnnnnnnntaga 444  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || |    
T  22055600 acattgagaggttactgaggggacataaaaatatcaaggtgcagctgcaaatttaatgcatacatctataataaggtgtaatgtcaagcaaaaaaataca 22055501  T
Q  445 ttagta---agtgagcagcaaaacc--nnnnnnnttatcatacatttaactaggtttactaagttcctgataataatattcaactatagaggaattatat 539  Q
    ||||||   ||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22055500 ttagtaaacagtgagcagcaaaaccaaaaaaaaaaaatcatacatttaactaggtttactaagttcctgataataatattcaactatagaggaattatat 22055401  T
Q  540 aatagttataatacaatagtaggtttggatgcaataacnnnnnnnntttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtcc 639  Q
    |||||||||||||| |||||||||||||||||||||||        ||| | ||||||||| ||||||||||| |||||| ||||||||||||||| ||     
T  22055400 aatagttataatacgatagtaggtttggatgcaataac--aattttttttttgtggtcaggatttgaacccccggatcttgcatatagtatgcaagatct 22055303  T
Q  640 ttaccaactgagttaagttcacgaggacatccaataacaaatttaaaattgtatcacatgagcctttttattttgaccaatttaaattatgatctattga 739  Q
    ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22055302 ttatcaactgagttaagctcacgaggacatgcaataacaaatttaaaattgtatcacatgagcctttttattttgaccaatttaaattatgatctattga 22055203  T
Q  740 gaaaattcagttttatatcatatatctcaaggttaacgatatagcaagccattcattattcattgtaatacgatttaaacaccatact------------ 827  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||                
T  22055202 gaaaattcagttttatatcatatatctcaaggttaactatatagcaagccattcattattcattgtaatacgatttaaacaccatactttaatcttaaga 22055103  T
Q  828 -tggttttgagtgtaggttatcgtgtattgcatcttggacgtcgttttcatcattttgatttttgttaatgaccagtgtggtgttcagatcatattttga 926  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22055102 ctggttttgagtgtaggttatcgtgtattgcatcttggacgtcattttcatcattttgatttttgttaatgaccagtgtggtgttcagatcatattttga 22055003  T
Q  927 gttaaatatgcaattaatttgattactgtatccttagaaggctaattcaattacctacaactagtatgttcaacccgaagtctaa 1011  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22055002 gttaaatatgcaattaatttgattactgtatccttagaaggctaattcaattacctacaactagtatgttcagcccgaagtctaa 22054918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 586 - 667
Target Start/End: Complemental strand, 17729500 - 17729420
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||| ||||||||||||| ||| ||| |||||| |||||||||| | ||||||||||| |||||||||||||||    
T  17729500 tttgtggtggtcggggtttgaacccc-agaccttgcatatattatgcaaggttcataccaactgagctaagttcacgaggac 17729420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 592 - 667
Target Start/End: Complemental strand, 23225933 - 23225859
Alignment:
Q  592 gtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||||||||||| | ||||| |||||| |||| |  || | |||||||||||||||||||||||||||    
T  23225933 gtggtcagggtttgaaccccga-atcttgcatatattatgaattgttcctaccaactgagttaagttcacgaggac 23225859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 43722839 - 43722757
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    ||||||||| | ||||||||||||||  || |||||||||| ||||||  |||| |||||||||||||||  ||||||||||||    
T  43722839 tttgtggtgtttagggtttgaaccccg-gaccttacatatattatgcattgtccataccaactgagttaaactcacgaggacat 43722757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 586 - 664
Target Start/End: Original strand, 8027384 - 8027461
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 664  Q
    |||||||||||| |||||||||||||| |||||| |||||| ||||||   ||||||||||||||| |||  |||||||    
T  8027384 tttgtggtggtcggggtttgaaccccc-gatcttgcatatattatgcattatccttaccaactgagctaaactcacgag 8027461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 587 - 669
Target Start/End: Original strand, 8415483 - 8415564
Alignment:
Q  587 ttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||  |||| |||||||||| ||||| ||| ||||||||    
T  8415483 ttgtggtggtcagggtttgaaccttg-gatcttacatatattatgcattgtccataccaactgaattaagctcatgaggacat 8415564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 590 - 667
Target Start/End: Complemental strand, 4916225 - 4916149
Alignment:
Q  590 tggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||| ||||||||||||||| | |||||||||||| ||||||  || |  |||||||||| |||||||||||||||    
T  4916225 tggtggccagggtttgaaccccaa-atcttacatatattatgcattgttcaaaccaactgagctaagttcacgaggac 4916149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 589 - 669
Target Start/End: Original strand, 21318243 - 21318322
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    ||||||||| ||||||||||||  ||| ||| |||||| ||||||  |||| |||||||||||||||| || |||||||||    
T  21318243 gtggtggtcggggtttgaaccct-agaccttgcatatattatgcattgtccctaccaactgagttaagctcgcgaggacat 21318322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 633
Target Start/End: Original strand, 18903745 - 18903791
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgca 633  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  18903745 tttgtggtggtcagggtttgaa-ccccagaccttacatatattatgca 18903791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 54500643 - 54500561
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    |||||||||||||| ||||||| |||| || |||||||||| ||||||  |||  ||||||||||| |||| ||||||| ||||    
T  54500643 tttgtggtggtcagtgtttgaa-ccccggaccttacatatattatgcattgtctctaccaactgagctaagctcacgagaacat 54500561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 7230354 - 7230273
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||| |  ||||||||||||  || ||| |||||| ||||||  |||||||||||||||| |||| |||||||||||    
T  7230354 tttgtggtggccgaggtttgaaccccg-gaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggaca 7230273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 668
Target Start/End: Complemental strand, 8495034 - 8494980
Alignment:
Q  614 gatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||| |||||| ||||||  |||| ||||||||||| ||||||||||||||||    
T  8495034 gatcttgcatatattatgcattgtccctaccaactgagctaagttcacgaggaca 8494980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 11949750 - 11949831
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||| ||||||||| |||| || ||| |||||| ||||||  |||| ||||||||||| |||| ||| |||||||    
T  11949750 tttgtggtggtcggggtttgaa-ccccggaccttgcatatattatgcattgtccataccaactgagctaagctcatgaggaca 11949831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 42845099 - 42845018
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||| | |||| ||||||  || ||| |||||| ||||||  |||||| |||||||||||||| |||||||||||    
T  42845099 tttgtggtggtcggagttttaaccccg-gaccttgcatatattatgcattgtcctttccaactgagttaagctcacgaggaca 42845018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 43034332 - 43034409
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    ||||||| | ||||||||||| | ||| ||| |||||| ||||||  |||| |||||||||||||||| ||||||||||    
T  43034332 gtggtggccggggtttgaacctc-agaccttgcatatattatgcattgtccataccaactgagttaagctcacgaggac 43034409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 662
Target Start/End: Original strand, 5179909 - 5179950
Alignment:
Q  621 catatagtatgcaaggtccttaccaactgagttaagttcacg 662  Q
    |||||| |||||||  ||||||||||||||||||||||||||    
T  5179909 catataatatgcaatatccttaccaactgagttaagttcacg 5179950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 668
Target Start/End: Original strand, 5360291 - 5360348
Alignment:
Q  611 ccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||| ||| |||| | |||||| | |||||||||||||||||||||||||| |||||    
T  5360291 ccagaccttgcatacattatgcatgatccttaccaactgagttaagttcacggggaca 5360348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 668
Target Start/End: Original strand, 33900735 - 33900792
Alignment:
Q  611 ccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||| |||||| ||||||  |||||||||||||||| |||||| ||| |||||    
T  33900735 ccagatcttgcatatattatgcattgtccttaccaactgagataagtttacggggaca 33900792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 617 - 666
Target Start/End: Original strand, 39842029 - 39842078
Alignment:
Q  617 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgagga 666  Q
    |||||||||| ||||||  ||||||| ||||||||||||| |||||||||    
T  39842029 cttacatatattatgcattgtccttatcaactgagttaagatcacgagga 39842078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 586 - 667
Target Start/End: Complemental strand, 44293649 - 44293569
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||||||||| ||||||| |||||||||||||| ||||||  |||  ||||||||||| |||| ||||||||||    
T  44293649 tttgtggtggtcagggttcgaacccc-agatcttacatatattatgcattgtctataccaactgagctaagctcacgaggac 44293569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 29376975 - 29376894
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||| |||||||||| || ||| ||| |||||| || |||  |||| |||||||||||||||| |||||||||||    
T  29376975 tttgtggtggtcggggtttgaactcc-agaccttgcatatattacgcattgtccataccaactgagttaagctcacgaggaca 29376894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 668
Target Start/End: Original strand, 33373752 - 33373820
Alignment:
Q  599 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||||||| ||| |||||||||| |||| |  |||| |||||||||||||||| |||||||||||    
T  33373752 gggtttgaacccc-agaccttacatatattatgaattgtccataccaactgagttaaggtcacgaggaca 33373820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 7997014 - 7996933
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||| ||||||||| ||||||| ||| |||||| |||||   |||| ||||||||||| |||| |||| ||||||    
T  7997014 tttgtggtggtcggggtttgaa-ccccagaccttgcatatattatgcgttgtccataccaactgagctaagctcacaaggaca 7996933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 609 - 663
Target Start/End: Complemental strand, 15188951 - 15188897
Alignment:
Q  609 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacga 663  Q
    |||||||||||||||||| ||||||  |||| ||| |||||||||||| ||||||    
T  15188951 ccccagatcttacatatattatgcattgtccatactaactgagttaagctcacga 15188897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 667
Target Start/End: Complemental strand, 18533743 - 18533663
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||  |||||||||||||  |||||| |||||| ||||||  || |||||||||||||| ||| | ||||||||    
T  18533743 tttgtggtggttggggtttgaaccccg-gatcttgcatatattatgcattgttcttaccaactgagtcaagcttacgaggac 18533663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 667
Target Start/End: Original strand, 19163523 - 19163603
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||| ||||||||| |||| || ||| |||| | ||||||  |||| ||||||||||| |||| ||||||||||    
T  19163523 tttgtggtggtcggggtttgaa-ccccggaccttgcataaattatgcattgtccataccaactgagctaagctcacgaggac 19163603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 668
Target Start/End: Complemental strand, 39821945 - 39821877
Alignment:
Q  599 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||| |||||||||||    
T  39821945 gggtttgaacccc-agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 39821877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 586 - 667
Target Start/End: Original strand, 7464478 - 7464558
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||| |||||||||||||  || |||||||||| ||||||  |||| |||||||||||||||| ||||||||||    
T  7464478 tttgtggtggtcggggtttgaaccccg-gaccttacatatattatgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 8127537 - 8127455
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    ||||||||||||| |||||||||||| | | ||| |||||  ||||||  ||||||||||||||||||||| ||||||||||||    
T  8127537 tttgtggtggtcatggtttgaaccccaa-accttgcatattttatgcattgtccttaccaactgagttaagctcacgaggacat 8127455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 586 - 664
Target Start/End: Original strand, 2186414 - 2186491
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 664  Q
    |||||| ||||| ||||||||||||| ||| |||||||||| |||| |  |||| ||||||||||||||||||||||||    
T  2186414 tttgtgatggtcggggtttgaacccc-agaccttacatatattatgtattgtccataccaactgagttaagttcacgag 2186491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 609 - 668
Target Start/End: Complemental strand, 17588414 - 17588355
Alignment:
Q  609 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||||| |||||| ||||||  ||||||||||||||||||||| ||||| |||||    
T  17588414 ccccagatcttgcatatattatgcattgtccttaccaactgagttaagctcacggggaca 17588355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 590 - 664
Target Start/End: Original strand, 41442918 - 41442990
Alignment:
Q  590 tggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 664  Q
    ||||||||||| | ||||||||  |||||||||||||  |||||  ||||||||||| |||||||||||||||||    
T  41442918 tggtggtcaggatatgaacccc--gatcttacatatataatgcattgtccttaccaattgagttaagttcacgag 41442990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 586 - 662
Target Start/End: Original strand, 10922295 - 10922370
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacg 662  Q
    |||||||| ||| |||||||||||||  |||||| |||||| ||||||  |||| |||||||||||||||| |||||    
T  10922295 tttgtggtagtcggggtttgaaccccg-gatcttgcatatattatgcattgtccctaccaactgagttaagctcacg 10922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 661
Target Start/End: Original strand, 25441487 - 25441561
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcac 661  Q
    |||||||||| | ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||||||||    
T  25441487 tttgtggtggccggggtttgaacccc-agaccttgcatatattatgcattgtccataccaactgagctaagttcac 25441561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 617 - 668
Target Start/End: Original strand, 53633634 - 53633685
Alignment:
Q  617 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||| ||||||   |||||||||||||||||||| |||||||||||    
T  53633634 cttacatatattatgcattatccttaccaactgagttaagctcacgaggaca 53633685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 1149056 - 1149137
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||  ||||||| ||||||  ||| ||| |||||| ||||||  |||||||||||||||| |||| |||||||||||    
T  1149056 tttgtggtgtccagggttcgaaccct-agaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggaca 1149137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 21160125 - 21160045
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||  |||||||||||||| || |||||||||| ||||||   ||| || |||||||||||||||||||| ||||    
T  21160125 tttgtggtggtg-gggtttgaaccccc-gaccttacatatattatgcattatccatatcaactgagttaagttcacgacgaca 21160045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 33633305 - 33633386
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||||| ||| |||| ||  ||||||||||||| ||||||  |||  ||| |||||||||||| |||||||||||    
T  33633305 tttgtggtggtcagagttcgaactccg-gatcttacatatattatgcattgtctatactaactgagttaagctcacgaggaca 33633386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 51882187 - 51882268
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||| | ||||||||||||   |||||| |||||| ||||||  |||| |||||||||||||||| ||||| |||||    
T  51882187 tttgtggtggccggggtttgaaccctg-gatcttgcatatattatgcattgtccataccaactgagttaagctcacggggaca 51882268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 628 - 662
Target Start/End: Complemental strand, 54897353 - 54897319
Alignment:
Q  628 tatgcaaggtccttaccaactgagttaagttcacg 662  Q
    ||||||| |||||||||||||||||||||||||||    
T  54897353 tatgcaatgtccttaccaactgagttaagttcacg 54897319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 666
Target Start/End: Complemental strand, 11436547 - 11436502
Alignment:
Q  621 catatagtatgcaaggtccttaccaactgagttaagttcacgagga 666  Q
    |||||| |||||||  ||| ||||||||||||||||||||||||||    
T  11436547 catataatatgcaatatccctaccaactgagttaagttcacgagga 11436502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 636 - 669
Target Start/End: Original strand, 51250269 - 51250302
Alignment:
Q  636 gtccttaccaactgagttaagttcacgaggacat 669  Q
    ||||||||||||||||||||| ||||||||||||    
T  51250269 gtccttaccaactgagttaagctcacgaggacat 51250302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 587 - 667
Target Start/End: Original strand, 36321481 - 36321561
Alignment:
Q  587 ttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||| |||||| ||||||||| | ||| |||||| ||||||  |||||||||||||||| |||| ||||||||||    
T  36321481 ttgtggtggttagggttcgaacccccaaaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggac 36321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 586 - 662
Target Start/End: Complemental strand, 11647271 - 11647196
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacg 662  Q
    ||||||||||||||| || ||||||| | | ||| |||||| ||||||  |||||||||||||||||||||||||||    
T  11647271 tttgtggtggtcaggattcgaaccccaa-accttgcatatattatgcattgtccttaccaactgagttaagttcacg 11647196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 586 - 664
Target Start/End: Original strand, 11318182 - 11318260
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 664  Q
    |||||||||||  |||||||||||||||||||| ||||||  ||||||   |||||| ||| ||||||||| |||||||    
T  11318182 tttgtggtggttggggtttgaacccccagatctaacatattttatgcattatccttatcaattgagttaagctcacgag 11318260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 586 - 662
Target Start/End: Original strand, 16579361 - 16579436
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacg 662  Q
    |||||||||||||||||||||| || | || ||| |||||| ||||||  || | ||||||||||||||||||||||    
T  16579361 tttgtggtggtcagggtttgaa-ccacggaccttgcatatattatgcattgttcataccaactgagttaagttcacg 16579436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 633
Target Start/End: Complemental strand, 1809118 - 1809072
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgca 633  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  1809118 tttgtggtggtcagggtttgaa-ccccaaatcttacatatattatgca 1809072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 609 - 668
Target Start/End: Complemental strand, 3389214 - 3389155
Alignment:
Q  609 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||||| |||||| ||||||  |||| |||||||||||||| |||||||| ||||    
T  3389214 ccccagatcttgcatatattatgcattgtccataccaactgagttatgttcacgaagaca 3389155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 589 - 668
Target Start/End: Complemental strand, 6489078 - 6489000
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||| | ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||| |||||||||||    
T  6489078 gtggtggccggggtttgaacccc-agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 6489000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 5614838 - 5614758
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||  |||||||||||||| || |||||||||| ||||||   ||| || |||||||||||||||||||| ||||    
T  5614838 tttgtggtggtg-gggtttgaaccccc-gaccttacatatattatgcattatccatatcaactgagttaagttcacgacgaca 5614758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 667
Target Start/End: Complemental strand, 15889482 - 15889405
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    ||||||||| ||||||||||||  ||| ||| |||||| ||||||  |||| ||||||||||| |||| ||||||||||    
T  15889482 gtggtggtcggggtttgaaccct-agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 15889405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 667
Target Start/End: Complemental strand, 29695086 - 29695009
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    ||||||||| ||||||||||| | | | |||||||||| ||||||  |||| || ||||||||||||| ||||||||||    
T  29695086 gtggtggtcggggtttgaaccacga-accttacatatattatgcattgtccatatcaactgagttaaggtcacgaggac 29695009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 37932404 - 37932323
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||| ||||||| |||||||  || ||| |||||| ||||||  |||| ||||||||||| |||| |||||||||||    
T  37932404 tttgtggtggccagggttcgaaccccg-gaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 37932323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 615 - 668
Target Start/End: Complemental strand, 689593 - 689540
Alignment:
Q  615 atcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||| ||| ||  |||| || |||||||||||||||||||||||||    
T  689593 atcttacatatattatacattgtccatatcaactgagttaagttcacgaggaca 689540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 663
Target Start/End: Original strand, 11310438 - 11310514
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacga 663  Q
    ||||||||||||||||||| || ||||||||||| |||||| ||| ||  ||||  |||||||||| |||| ||||||    
T  11310438 tttgtggtggtcagggttt-aaaccccagatcttgcatatattatacattgtccaaaccaactgagctaagctcacga 11310514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 636 - 669
Target Start/End: Original strand, 40837939 - 40837972
Alignment:
Q  636 gtccttaccaactgagttaagttcacgaggacat 669  Q
    |||| |||||||||||||||||||||||||||||    
T  40837939 gtccataccaactgagttaagttcacgaggacat 40837972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 586 - 667
Target Start/End: Original strand, 8269355 - 8269435
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||| |||||||||||||  || ||| |||||| |||| |  |||||||||||||||| |||||||||||||||    
T  8269355 tttgtggtggtcggggtttgaaccccg-gaccttgcatatattatgtattgtccttaccaactgagctaagttcacgaggac 8269435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 586 - 670
Target Start/End: Complemental strand, 14768881 - 14768797
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacatc 670  Q
    |||||||||||| ||||||||||||| | |  ||||||||| ||| ||  |||| |||||||||||| ||| ||||||| |||||    
T  14768881 tttgtggtggtcggggtttgaaccccgaaactttacatatattatacattgtccctaccaactgagtcaagctcacgagaacatc 14768797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 617 - 669
Target Start/End: Original strand, 30678830 - 30678882
Alignment:
Q  617 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    |||||||||| ||||||  |||| |||||||||||||||| ||||||||||||    
T  30678830 cttacatatattatgcattgtccctaccaactgagttaagctcacgaggacat 30678882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 610 - 670
Target Start/End: Complemental strand, 52267815 - 52267755
Alignment:
Q  610 cccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacatc 670  Q
    |||||| ||| |||||  ||||||  ||||||||||||||||||||| |||||||||||||    
T  52267815 cccagaccttgcatattttatgcattgtccttaccaactgagttaagctcacgaggacatc 52267755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 1091253 - 1091171
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    |||||||||||||| ||||||||||| | | ||| |||| | ||||||  |||  |||||||||||||||| ||||||||||||    
T  1091253 tttgtggtggtcagagtttgaaccccga-accttgcatacattatgcattgtctataccaactgagttaagctcacgaggacat 1091171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 601 - 664
Target Start/End: Original strand, 3509942 - 3510005
Alignment:
Q  601 gtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 664  Q
    |||||||||||| || ||| |||||| ||||||  |||| ||||||||||| ||||||||||||    
T  3509942 gtttgaacccccggaccttgcatatattatgcattgtccataccaactgagctaagttcacgag 3510005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 6219850 - 6219930
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||||||||| |||||||||   || |||||||||| |||| |  |||| ||||||| |||||||| |||||||||||    
T  6219850 tttgtggtggtcaggatttgaacccg--gaccttacatatattatgtattgtccctaccaaccgagttaagctcacgaggaca 6219930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 621 - 668
Target Start/End: Original strand, 31061924 - 31061971
Alignment:
Q  621 catatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||| ||||||  ||||||||||||||||||||||||| |||||||    
T  31061924 catataatatgcattgtccttaccaactgagttaagttcatgaggaca 31061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 1794670 - 1794589
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||||||  ||||||||||||  |||||| |||||| ||||||  |||| ||| ||||||| |||| |||||||||||    
T  1794670 tttgtggtggtcgaggtttgaaccccg-gatcttgcatatattatgcattgtccatactaactgagctaagctcacgaggaca 1794589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 618 - 668
Target Start/End: Complemental strand, 18521290 - 18521240
Alignment:
Q  618 ttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||| |||| ||||||  ||||||||||| |||||||||||||||||||||    
T  18521290 ttacgtatattatgcattgtccttaccaattgagttaagttcacgaggaca 18521240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 609 - 667
Target Start/End: Original strand, 30798756 - 30798814
Alignment:
Q  609 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||| ||||||||||||| ||||||  |||||| |||| ||||||||| ||||||||||    
T  30798756 ccccggatcttacatatattatgcattgtccttgccaaatgagttaagctcacgaggac 30798814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 663
Target Start/End: Complemental strand, 29042611 - 29042535
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacga 663  Q
    |||||||||||| || ||||||||||  ||||||||||||| ||||||   ||| |||||| ||||||||||| ||||    
T  29042611 tttgtggtggtcgggatttgaaccccg-gatcttacatatattatgcattatccctaccaattgagttaagtttacga 29042535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 667
Target Start/End: Original strand, 33153867 - 33153947
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    ||||||||| || ||||||||||| |  || |||||||||| ||||||  |||| |||||||||||||||| |||| |||||    
T  33153867 tttgtggtgttcggggtttgaacctcg-gaccttacatatattatgcattgtccctaccaactgagttaagctcacaaggac 33153947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 586 - 669
Target Start/End: Original strand, 7388026 - 7388108
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    |||||||||||| ||||||||| ||| | | |||||||||| ||||||  ||||  ||||||||||||||| ||||||||||||    
T  7388026 tttgtggtggtcggggtttgaatcccga-accttacatatattatgcattgtcccaaccaactgagttaagctcacgaggacat 7388108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 37930118 - 37930037
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||| ||||||||| ||| | ||| | |||||| ||||||  |||||||||||||||| |||| |||||||||||    
T  37930118 tttgtggtggtcggggtttgaatcccga-atcctgcatatattatgcattgtccttaccaactgagataagctcacgaggaca 37930037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 590 - 667
Target Start/End: Complemental strand, 5526795 - 5526719
Alignment:
Q  590 tggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||| ||||||||||||| | |||||| ||||| ||||||  |||| ||||||||||| |||| ||||||||||    
T  5526795 tggtggtcggggtttgaaccccaa-atcttatatatattatgcattgtccataccaactgagctaagctcacgaggac 5526719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 592 - 669
Target Start/End: Original strand, 34448603 - 34448679
Alignment:
Q  592 gtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    |||||||||||||||||||   || |||||||||| ||||||  ||||  ||||||||||||||| ||||||||||||    
T  34448603 gtggtcagggtttgaaccctg-gaccttacatatattatgcattgtccaaaccaactgagttaagctcacgaggacat 34448679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 589 - 668
Target Start/End: Complemental strand, 5579764 - 5579686
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||| ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||| |||| ||||||    
T  5579764 gtggtggtcggggtttgaacccc-agaccttgcatatattatgcactgtccctaccaactgagctaagctcacaaggaca 5579686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 589 - 668
Target Start/End: Original strand, 27833391 - 27833469
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    ||||||||| |||||||||||||  || |||||||||| ||||||  |||||||||||||||| || | | |||||||||    
T  27833391 gtggtggtcggggtttgaaccccg-gaccttacatatattatgcattgtccttaccaactgagctaggcttacgaggaca 27833469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 609 - 667
Target Start/End: Original strand, 7872757 - 7872815
Alignment:
Q  609 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    ||||||| ||| |||||| ||||||  |||||||||||||||| |||||||||| ||||    
T  7872757 ccccagaccttgcatatattatgcattgtccttaccaactgagctaagttcacgtggac 7872815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 637 - 667
Target Start/End: Original strand, 35571970 - 35572000
Alignment:
Q  637 tccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||||||||||||||||||||||    
T  35571970 tccttaccaactgagttaagttcacgaggac 35572000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 40187626 - 40187703
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||| || ||||||||||| | ||| |||||||||| ||||||  |||| |||||||||||||||| ||| ||||||    
T  40187626 gtggtgttcggggtttgaaccgc-agaccttacatatattatgcattgtccctaccaactgagttaagctcatgaggac 40187703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 664
Target Start/End: Complemental strand, 44651575 - 44651498
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 664  Q
    |||||||||||  ||||||||||||| | | |||||||||  |||||||||||| ||||||||||| |||  |||||||    
T  44651575 tttgtggtggttggggtttgaaccccaa-accttacatattttatgcaaggtccataccaactgagctaaactcacgag 44651498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 595 - 668
Target Start/End: Original strand, 46220947 - 46221018
Alignment:
Q  595 gtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||||||||| || |||||||||  ||||||  |||| |||||||||||||||| |||||| ||||    
T  46220947 gtcagggtttgaaccccc-gaccttacatatt-tatgcattgtccataccaactgagttaagctcacgaagaca 46221018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 9977131 - 9977050
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||||||||||||| ||||||| ||| |||||| ||||||   ||| |||||| ||||||||| ||| |||||||    
T  9977131 tttgtggtggtcagggtttgaa-ccccagaccttgcatatattatgcattatccataccaattgagttaagctcaggaggaca 9977050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 588 - 668
Target Start/End: Complemental strand, 788938 - 788859
Alignment:
Q  588 tgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||| |||||||||| || | | ||| |||||| ||||||  |||||||||||||||| |||| |||||||||||    
T  788938 tgtggtggtcggggtttgaactccga-accttgcatatattatgcattgtccttaccaactgagataagctcacgaggaca 788859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 9987125 - 9987074
Alignment:
Q  617 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||| ||||||  ||||||||||||||||||||| ||||| |||||    
T  9987125 cttacatataatatgcattgtccttaccaactgagttaagctcacggggaca 9987074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 621 - 668
Target Start/End: Complemental strand, 20208159 - 20208112
Alignment:
Q  621 catatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| |||||    
T  20208159 catatactatgcaatgtccttaccaactgagttaagtttacgcggaca 20208112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 621 - 668
Target Start/End: Complemental strand, 22102182 - 22102135
Alignment:
Q  621 catatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| |||||    
T  22102182 catatactatgcaatgtccttaccaactgagttaagtttacgcggaca 22102135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 8138445 - 8138526
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 668  Q
    |||||||||||   |||||||||||| ||| |||||||||| ||||||  || |||| |||||||| ||| ||||||||||||    
T  8138445 tttgtggtggttgaggtttgaacccc-agaccttacatatattatgcattgttcttatcaactgagctaaattcacgaggaca 8138526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 592 - 666
Target Start/End: Complemental strand, 20744206 - 20744133
Alignment:
Q  592 gtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgagga 666  Q
    |||||| ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||| |||||||||    
T  20744206 gtggtcggggtttgaacccc-agaccttgcatatattatgcattgtccataccaactgagctaagctcacgagga 20744133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 589 - 667
Target Start/End: Complemental strand, 27834410 - 27834333
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    ||||||||| ||||||||||||| ||| ||| |||||| |||||   |||| |||| ||||||||||| ||||||||||    
T  27834410 gtggtggtccgggtttgaacccc-agaccttgcatatattatgccttgtccctacccactgagttaagctcacgaggac 27834333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 617 - 662
Target Start/End: Original strand, 10497169 - 10497214
Alignment:
Q  617 cttacatatagtatgcaaggtccttaccaactgagttaagttcacg 662  Q
    |||||||||| ||||||  |||||||| ||||||||||||||||||    
T  10497169 cttacatatattatgcattgtccttacaaactgagttaagttcacg 10497214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 24592836 - 24592913
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    ||||||| | ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||||||||||||||    
T  24592836 gtggtggccggggtttgaacccc-agaccttgcatatattatgcattgtccctaccaactgagctaagttcacgaggac 24592913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 586 - 664
Target Start/End: Original strand, 31815874 - 31815951
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 664  Q
    |||||||||||| |||||||||||||  || ||| |||||| ||||||  |||| |||||||||||||||| |||||||    
T  31815874 tttgtggtggtcggggtttgaaccccg-gaccttgcatatattatgcattgtccctaccaactgagttaagctcacgag 31815951  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 586 - 667
Target Start/End: Complemental strand, 2257045 - 2256965
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||| | ||||| ||||||| ||| ||| |||||| ||||||  |||| |||||||||||||||| ||||||||||    
T  2257045 tttgtggtggccggggttcgaacccc-agaccttgcatatattatgcattgtccataccaactgagttaagctcacgaggac 2256965  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 589 - 669
Target Start/End: Original strand, 25561987 - 25562066
Alignment:
Q  589 gtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    ||||||||| | ||||||||||| ||||||| |||||  ||||||  |||||||||||||||| |||||| ||||| ||||    
T  25561987 gtggtggtcggagtttgaacccc-agatcttgcatattttatgcactgtccttaccaactgagctaagtttacgagaacat 25562066  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 661
Target Start/End: Original strand, 18324881 - 18324955
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcac 661  Q
    ||||||||| |||||||| ||| ||  ||||||| |||||| ||||||  ||||||||||||||||||||| ||||    
T  18324881 tttgtggtgttcagggttcgaatcct-agatcttgcatatattatgcattgtccttaccaactgagttaagctcac 18324955  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 586 - 665
Target Start/End: Original strand, 27412823 - 27412901
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgagg 665  Q
    |||||||||||| ||||||||||  | ||| |||||||||| ||||||  |||  |||||||||||||||| ||||||||    
T  27412823 tttgtggtggtcggggtttgaacaac-agaccttacatatattatgcattgtctctaccaactgagttaagctcacgagg 27412901  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 599 - 669
Target Start/End: Complemental strand, 5676800 - 5676731
Alignment:
Q  599 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 669  Q
    |||||||||||||||   ||| |||||| ||||||  ||| ||||||||||||||||| ||||||||||||    
T  5676800 gggtttgaacccccacc-cttgcatatattatgcattgtcattaccaactgagttaagctcacgaggacat 5676731  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 22359072 - 22359007
Alignment:
Q  593 tggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttc 659  Q
    ||||||||||||||||  |  |||||| |||||| ||||||  ||||||||||||||||||||||||    
T  22359072 tggtcagggtttgaactgcg-gatcttgcatatattatgcattgtccttaccaactgagttaagttc 22359007  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 667
Target Start/End: Original strand, 9383196 - 9383276
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||| ||||| ||||| ||||| | ||| |||||| ||||||  |||| ||||||||||| |||| ||||||||||    
T  9383196 tttgtggtgg-caggggttgaaaccccaaaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggac 9383276  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 667
Target Start/End: Original strand, 29798504 - 29798584
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    |||||||||||| ||||| |||||||  || |||| ||||  ||||||  |||| |||||||||||||||| ||||||||||    
T  29798504 tttgtggtggtcggggttcgaacccct-gaccttaaatattttatgcattgtccataccaactgagttaagctcacgaggac 29798584  T

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Target: scaffold0050 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 586 - 666
Target Start/End: Original strand, 53367 - 53446
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgagga 666  Q
    |||||||||||| ||||||||| ||||||| ||| |||||  ||||||  |||| | |||||||||||||| |||||||||    
T  53367 tttgtggtggtcggggtttgaa-ccccagaccttgcatattttatgcattgtcccttccaactgagttaagctcacgagga 53446  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 667
Target Start/End: Original strand, 15917 - 15997
Alignment:
Q  586 tttgtggtggtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 667  Q
    ||||||||||   ||||||||||||| ||| ||| |||||| ||| ||  ||||||||||| ||||||||| ||||||||||    
T  15917 tttgtggtggctggggtttgaacccc-agaccttgcatatattatacattgtccttaccaattgagttaagctcacgaggac 15997  T

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