View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_low_13 (Length: 434)
Name: NF9031_low_13
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 195 - 419
Target Start/End: Original strand, 52134957 - 52135181
Alignment:
| Q |
195 |
gggactgctgtgtgcatcacaaaaaattcaaggtttgttgtttctttggtatgataacttcctttcctttactttcacacaacataggtaaggaaatagt |
294 |
Q |
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| T |
52134957 |
gggactgctgtgtgcatcacaaaaaattcaaggtttgttgtttctttggtatgataacttcctttcctttactttcacacaacataggtaaggaaatagt |
52135056 |
T |
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| Q |
295 |
tttatgatgtaactcaagctgaaacacttttgagaactcttcaattaaggactcatgagcaatatgaataagactgtcatcatccaaatgatgaaagtca |
394 |
Q |
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| T |
52135057 |
tttatgatgtaactcaagctgaaacacttttgagaactcttcaattaaggacttatgagcaatatgaataagactgtcatcatccaaatgatgaaagtca |
52135156 |
T |
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| Q |
395 |
gctgttccatgatcattacatgatg |
419 |
Q |
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| T |
52135157 |
gctgttccatgatcattacatgatg |
52135181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 52134851 - 52134914
Alignment:
| Q |
81 |
caattggtatcctagaacagaa---gatagagtaataagtgtgcttgactgctagattgaagat |
141 |
Q |
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| T |
52134851 |
caattggtatcctataacagaagaagatagagtaataagtgtgcttgactgctagattgaagat |
52134914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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