View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_low_19 (Length: 348)
Name: NF9031_low_19
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 29998118 - 29998242
Alignment:
| Q |
82 |
ataagcgataaactttttcacttgacaaaataattattttaaagtgcaaataataacttcttaaacaacattgatggtaatctttacaaattagttgttt |
181 |
Q |
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| T |
29998118 |
ataagcgataaactttttcacttgacaaaataattattttaaagtgcaaataataacttcttaaacaacattgatggtaatctttacaaattagttgttt |
29998217 |
T |
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| Q |
182 |
tttcgtctaaaccattgcacccaag |
206 |
Q |
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| T |
29998218 |
tttcgtctaaacgattgcacccaag |
29998242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 203 - 334
Target Start/End: Original strand, 29998277 - 29998406
Alignment:
| Q |
203 |
caagcaagaatgagtaacttgttattatcgtttgcatacaagggtcatttaaatatctctcaagttcattctgcttatcaattctgttttaatcttttca |
302 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
29998277 |
caagaaagaatgagtaacttgttattatcgtttgca--caagggtcatttaaatatctctcaagttcattttgcttatcaattgtgttttaatcttttca |
29998374 |
T |
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| Q |
303 |
atgttgcttaaaagcattagctcttgcaaaga |
334 |
Q |
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| T |
29998375 |
atgttgcttaaaagcattagctcttgcaaaga |
29998406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 29997989 - 29998072
Alignment:
| Q |
1 |
tacatattaaataaagcattcttattataattattgccacatttcgaataatcgaactatatttccacttaaacacattatata |
84 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29997989 |
tacatattaaataaagcattcttattacaattattgccacatttcgaataatcgaactatatatccacttaaacacattatata |
29998072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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