View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_low_28 (Length: 276)
Name: NF9031_low_28
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 18588783 - 18588539
Alignment:
| Q |
15 |
aaatataatacctaaactaaattaccctacttaaatataagctnnnnnnntaacctaaatagcacaaactgcctccactgcaagcctcttgaccatattt |
114 |
Q |
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| T |
18588783 |
aaatataatacctaaactaaattaccctacttaaatataagctaaaaaa-taacctaaatagcacaaactgcctccactgcaagcctcttgaccatattt |
18588685 |
T |
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| Q |
115 |
ccacaattagttgccccaaatgttttttctgaaacatcaattgagcatgattccttgccaacacatgcctatataaaacccaaaaaacaaagttaattaa |
214 |
Q |
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| T |
18588684 |
ccacaattagttgccccaaatgttttttctgaaacatcaattgagcatgattccttgccaacacatgcctatataaaacccaaaaaacaaagttaattaa |
18588585 |
T |
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| Q |
215 |
tcatcatcatatactattaaagtataaaataatcttgaaatagcaa |
260 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18588584 |
tcatcatcatatactattatagtataaaataatcttgaaatagcaa |
18588539 |
T |
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