View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_low_3 (Length: 767)
Name: NF9031_low_3
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 19 - 554
Target Start/End: Complemental strand, 18586855 - 18586320
Alignment:
| Q |
19 |
catgcaacccaactttatatgtccacttgtgtgatgacaaatctttgatgattgtctcatcaccttttgtaccaatcaattcaataggactaacaagacc |
118 |
Q |
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| T |
18586855 |
catgcaacccaactttgtatgtccacttgtgtgatgacaaatctttgatgattgtctcatcaccttttgtaccaatcaattcaataggactaacaagacc |
18586756 |
T |
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| Q |
119 |
atcttgccatttatcatattcttttccataattctattatccacaaaatacacatatattaattacaataatagtaatcaaaatgagtgtttttgaataa |
218 |
Q |
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| T |
18586755 |
atcttgccatttatcatattcttttccataattctattatccacaaaatacacatatattaattacaataatagtaaccaaaatgagtgcttttgaataa |
18586656 |
T |
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| Q |
219 |
ttataattgtgatacctgaagtccaacagtgacactaagaagactgatatcattcctgccatgcttcaacttaatgttagtctcaaattgatcattgtga |
318 |
Q |
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| T |
18586655 |
ttataattttgatacctgaagtccaacagtgacactaagaagactgatatcattcctgccatgcttcaacttaatgttagtctcaaattgatcattgtga |
18586556 |
T |
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| Q |
319 |
atgccatatgtagcccaatgagaacctatttatatcattaaatgaataatttgacaatgatataatgttaacataatgataatcaaccatgagtttaatt |
418 |
Q |
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| T |
18586555 |
atgccatatgtagcccaatgagaacctatgtatatcattaaatgaataatttgacaatgatttaatgttaacataatgttaatcaaccatgagtgtaatt |
18586456 |
T |
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| Q |
419 |
taaatagcatgtgtcacattaccaatatgttctccattgacaaatgcatgaattacatgtccagtgccattaatccttagaattgtattatttgtcaaaa |
518 |
Q |
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| T |
18586455 |
taaatagcatgtgtcacattaccaatatgttctccattgacaaatgcatgaattacatgtccagtgccattaatccttagaattgtattatttgtccaaa |
18586356 |
T |
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| Q |
519 |
ctggatccttttgattaatatcaagtctatcattag |
554 |
Q |
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| T |
18586355 |
ctggatccttttgattaatatcaagtctatcattag |
18586320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 623 - 754
Target Start/End: Complemental strand, 18586251 - 18586120
Alignment:
| Q |
623 |
tagggttttattaattaccttgtcatgtaccaaagatagtcactagaatcattagcagcaattttttgatcaacaattgtatttttagaaacacttgatt |
722 |
Q |
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| T |
18586251 |
tagggttttattaattaccttgtcatgtaccaaagatagtcactagaatcattagcagcaattttttgatcaacaattgtatttttagaaacacttgatt |
18586152 |
T |
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| Q |
723 |
ttccaatcaaagaattatgaacattctctgct |
754 |
Q |
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| T |
18586151 |
ttccaatcaaagaattatgaacattctctgct |
18586120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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