View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_low_34 (Length: 214)
Name: NF9031_low_34
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 8103508 - 8103693
Alignment:
| Q |
15 |
tggtggtaaaggagacccttatgggtgggttcaacaagtataaccttgagatcccatggagtaagatcaaatttttcatcagttgaatttggtgccttta |
114 |
Q |
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| T |
8103508 |
tggtggtaaaggagacccttatgggtgggttcaacaagtagaaccttgagatcccatggagtaagatcaattttttcatcagttgaatttggtgccttta |
8103607 |
T |
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| Q |
115 |
ttgtatctgtagagaggactcggatggcagccatgtattcattgcagccttagtcgatgcttagacatatctttatatacagaagc |
200 |
Q |
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| T |
8103608 |
ttgtatctgtagagaggactcggatggcagccatgttttcattgcagccttagtcgatgcttagacatatctttatatacagaagc |
8103693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 40146429 - 40146338
Alignment:
| Q |
62 |
gagatcccatggagtaagatcaaatttttcatcagttgaatttggtgcctttattgtatctgtagagaggactcggatggcagccatgtatt |
153 |
Q |
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| T |
40146429 |
gagatcccatggagttaaatcaattttttgatcacttgaatttggtgacttgattgtatgggtagagaggacttggaatgcagccatgtatt |
40146338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 40409388 - 40409341
Alignment:
| Q |
96 |
gttgaatttggtgcctttattgtatctgtagagaggactcggatggca |
143 |
Q |
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| T |
40409388 |
gttgaatttggtgcctttattgtatcggtagagagaacttggatggca |
40409341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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