View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_low_36 (Length: 212)
Name: NF9031_low_36
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32805757 - 32805944
Alignment:
| Q |
1 |
tactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgagcctattgttatttcgaagaaggcagcctctttagttg |
100 |
Q |
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| T |
32805757 |
tactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgagcctattgttatttcgaagaaggcagcctctttagttg |
32805856 |
T |
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| Q |
101 |
aggagttcaactctgttaatcctccccgaaactcccctccggttagtgctctcactaagtggattccacctcctagtggttatgttaa |
188 |
Q |
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| T |
32805857 |
aggagttcaactctgtgaatcctccccgaaactctcctctggttagtgctctcaataagtggattccacctcctagtggttatgttaa |
32805944 |
T |
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Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 6095160 - 6094973
Alignment:
| Q |
1 |
tactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgagcctattgttatttcgaagaaggcagcctctttagttg |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6095160 |
tactccctctggctgatttggagtcataggaaccaactagtttttaaccaatctgtgtttgagcctattgttatttcaaagaaggcagcctctttagttg |
6095061 |
T |
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| Q |
101 |
aggagttcaactctgttaatcctccccgaaactcccctccggttagtgctctcactaagtggattccacctcctagtggttatgttaa |
188 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6095060 |
aggagttcaactctgttaatcctccctgaaactcccctccggttagtgctctcactaagtggattccacttcctagtggttatgttaa |
6094973 |
T |
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