View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9031_low_38 (Length: 202)
Name: NF9031_low_38
Description: NF9031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9031_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 36871110 - 36871276
Alignment:
| Q |
17 |
agacaagatactttccaatgtactcaggattctcatcttcaccaacaacacaacatcctcttagcggcaccaaattgcgatgtttcaagctactaacaat |
116 |
Q |
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| T |
36871110 |
agacaagatactttccaaagtactcaggattctcatcttcaccaacaacacaacatcctcttagcggcaccaaattgcgatgtttcaagctactaacaat |
36871209 |
T |
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| Q |
117 |
ccccacctctctgtaaaactcaacatctccttgataatcagattcttcaatccttttaaccgcaaca |
183 |
Q |
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| T |
36871210 |
ccccacctctctgtaaaactcaacatctccttgataatcagattcttcaatccttttaaccgcaaca |
36871276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 183
Target Start/End: Original strand, 36877738 - 36877862
Alignment:
| Q |
59 |
caacaacacaacatcctcttagcggcaccaaattgcgatgtttcaagctactaacaatccccacctctctgtaaaactcaacatctccttgataatcaga |
158 |
Q |
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| T |
36877738 |
caaccacacaacaccctcttaatggcactagattgcggtgtttcaagttgccaataatctccacttcggtatagaactcatcatccccttgaaaatcaga |
36877837 |
T |
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| Q |
159 |
ttcttcaatccttttaaccgcaaca |
183 |
Q |
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| T |
36877838 |
ttcttccatgcatttaacagcaaca |
36877862 |
T |
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